G1186993 (LOC106592069)


Basic Information

Item Value
gene id G1186993
gene name LOC106592069
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53043502 ~ 53046936 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1353703
AGGGCAAACACATAAGAACATTTATTGCTGTGCCGTTAGGCTTACCTTTGATGCCATAGTCATTGACTTAGAGATTTATCTGGTCATTTATGAGAACATCTTTGAAGCTAAAACAGCCCTTCAAGGTCACGTTATGGTTCCTGTCAACCCACACGCTCATGTTTTACACCTGGAGGTTGAGGTCgcccctaaccacagatctagaatcagattACCCAACCCTTTATTCTAACCTTAAAGATTAAGGGGATGAACTAATATCTGACCTTGTATCAGTGGTTAGGGGCAGCTTCTACCTATTCCCACCACCATTAACCAAGACGGTCCAGGTGTGGACTATAATAATAAAGTGGCATCTCCTGAAGTTACAGTAACAGACAACCCATAGCAATAATCACTCACTGATATCCCACATGTTCCAAACATGTTAAAGACAATCACCAGTGATTCAATTAAATTTCAATGAAGTTCATTAAACAGGTCAAACCGAACTTTGCTCATCACCTCAATGAGaaccctccccccaaaaaacccCACCAGGGATACAAAAGTGTATTCTAGGTCAGGCTAAGATGGCCACTTCATCTCAGATGTACTGAGTGGCATACCAAAAGGTTGGGAAAAGATGCAATGTTTATTCATCGTTACAGTGACAGCTTGATATCAAAACTAGGGTTTGCTACTACagatgtgtgttagagagagagatagagggggtgaGTGAATTGCGTATCTTTTAAACAAGGAGAAGCATCCTATTGCAATCCCATAACCATGCTAAGGAACATTGATGTGTCAATAATTAGATATGTCATCATGTATTGGTATGACACTCAAATTAAAGCTTTCAAAAAGATCAGCAATGTTTTTTCATCTTGGTGTTAGCATAGGAGGCTAAGCTAAGCGACAACGTTCCCTGTTCGTCCCGGGAATGTCTGTGATTAGGAAATGTTCTCCTGTGCTGCGAAATTATGGCCCTTCCCTCCTTTGGTCTTCATTTGGGATTCCAAAATCCAAAATTCCAGGAGGAACCGAAATTCCCAAAGTTACGTGTCCCCAAGGGAACTTTTTCTTCAGCGCACAGagcttatttacatttttttgcttgGTTGTTCTCTCCACACACTTTTAATAATAAAAATGATATATTTTTAACCCCACATTATAAAACTGAAAGCCACTTGCAGACAAATGGTTTTCGACAATAAGTTATACGAGAAATCGTACGGGTAAGGTATAGGTTAAGGACAAAGTCATGACAACACTGTCACGCTCCTATTCTGTATTCTAAAAAAATATTGGAATAGAAACCACTTTATAATTATCATCTCAACATTGACATCTTGATACACTTCGGTATATATATTAAAACTCTTGGGTAAAATGCAATAATTCCATCATGCAGGCAAACCGCCTCCATCTTCTAGGAGGTTCTATTGGTCTGGAATTCATATCTCGGATATATTCTTCCTTTCTTACTTTGGCAAAGTGACAAAGAGAAAGAAGTGACAGGTTTGAATTTCACACACCTTCCATTGTGAAGCAACTGTATGCAGGTGTGAAGTTTTCATCTCCCAGAGTGAATGGTGCTCGTCTCGTCTCCTCAGGTTGTTTGTCTCAAGAGGGTCAGTGTCTTTGACAGAGATGCTTTGCTACTGTGAGTGGATATAGCAGgctgtcctgtctctctcattcactccctgtccttctctctgaGTGAGTGACGTTGGGATAAAAGAGCCTATTTCACAAACTGTTGCATGCAGGAGTGGGATCTTAGTatggtctctatctctctgtctctctttttcctgttgtactatcacacacacacacacacacacacacacacacacactccttcgtGAAAAGTACCGATGGAGGGAAGGGGTtaggtgatggtgatgataagTTAACGCATGCTTTTGCTACCTAAGTCTCAGCTCTTCCACTATAACAACTCCTTCTCAGGTGACCTCTACACTACCTCTGTTCAACCTAgacctcctcacccctcttccaCTCCACACACAAGGACCTGTAGCCTCCGTCTACCACAACAGATCTGGCTTCAGCCCTCCTACACCGTGACGTACATTCAGGCTCATTCTACACTGCAACGTACATACAGCCTCCTACTACACTGTGATTTACAGCCACACcgaaaaataaatcaaatctgtTGGCTTGATCAGCTCAGTTTTGTTAGATATTCTATTTTTGCATTTTAAACTTCTGTGAAGCCGAAGAAAAAATGAAAACAAACAGGAAAACAGGAACGACGTTCAGACAAAATGTTCTCGTTACATCTCTGTCTCAGCTTGTCTCTGGCTACATCTTCTATGTATATCTCCCTGATATGATGATGCAGCCCTCCTGGTCTGTCTCCACCTCTGGGGGTCCTTCTCCTCCACAGGGGTATGATGGGGGGTCCATCCCAGCCCCCCACACCCCCACCACAGGTGTCACACCTGTAATCCCCTTTAACCTTCCACCGTTTGATCTCTGACCCTCCACACCTGAACCACTGCCACAGGGTAGCACAAAATGGGACAGGGGGGGGGTCATAAACAAATATTtatagagcgagagggaggggtttGGTTATAGGAATTCACTGGATTACATCACACGTTGTCAAAAACGTCAAACTTCTCTCTGCCTGAGGGGGACGGAGAGGAACAGTAAGGGGTTGATGAATCCTAATAGGAGCTGTAGTAGACAACAAGGGATTCAGGCTTCATCTGTTTTTACTACAGGACCCTACTGTTGTTTGGCTTGAGCTTTTCCCCTTGAGGTCCGGCGCCTCTCCCaactgtccctcctctcctctgcctcccccactctctccccaagGGTTGGCCAGGAAGCCCTGGTGGTCCAACTCCAACCCTAGgatctgtctcccctcccccctcctcgccCTCTGATTCAAGCTCCCAGTGCTGTTGCATTTCTTCACCCCCGGGGGTGCCAGGGAGGCGGGCGAGAGCAACGATGTGAGCGACAGACTGCTTAGCGTCTCCGACAAGTGTTCGCTGTTGCCCGCCTGGCTGGAGCCACACCCCCCGATAGACAAACTGATCCCGATGCCCAGGTCCTCCAGGTCACATGGAACGGGGTCCATGGAGTCTTCCCGGGTGTAGCCGGGGCTGATGCTACCCCTGCCGCTGCTCTGGCTCCGCTGGTGGCCCCGAGTGGCCTGGAGGGTGAGGGCAGGGCCTGACGAGGGGCTGGGCCGCGGTCTCAGAGTCTGGCCTGCTGGGCAGCTGGTGGGGTCCTCAGGGAGCAGGGGGCAGagcaggggtagaggagggaggggggacacCAGGTCTTGAGGGGGCGAAACACTGAAGCTGAGTCCTTCCTCTAGGGTGGTCTGGAGGCTGCCATCGGAGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1353703 True 3399 lncRNA 0.47 2 53043502 53046936

Neighbor

gene id symbol gene type direction distance location
LOC110486776 LOC106606809 coding downstream 301947 52730378 ~ 52741555 (-)
LOC110486769 gtf2f1 coding downstream 613468 52415319 ~ 52430034 (-)
LOC110485216 NA coding downstream 711926 52155640 ~ 52331576 (-)
LOC110538721 NA coding downstream 853799 52186557 ~ 52189703 (-)
LOC118938556 NA coding downstream 941545 52100885 ~ 52101957 (-)
LOC110485222 LOC106601739 coding upstream 46730 53093666 ~ 53107919 (-)
LOC110538731 LOC106592182 coding upstream 199458 53246394 ~ 53250376 (-)
LOC110539023 LOC106601728 coding upstream 311424 53358360 ~ 53417730 (-)
LOC118938325 LOC106606746 coding upstream 383096 53430032 ~ 53440075 (-)
LOC110538745 LOC106606750 coding upstream 403618 53450554 ~ 53456191 (-)
G1186972 NA non-coding downstream 28225 53012004 ~ 53015277 (-)
G1186970 NA non-coding downstream 40373 53002908 ~ 53003129 (-)
G1186969 NA non-coding downstream 41403 53001849 ~ 53002099 (-)
G1186966 NA non-coding downstream 47960 52994626 ~ 52995542 (-)
G1186965 NA non-coding downstream 50836 52992467 ~ 52992666 (-)
G1187023 NA non-coding upstream 72995 53119931 ~ 53122809 (-)
G1187704 NA non-coding upstream 164504 53211440 ~ 53211640 (-)
G1187711 NA non-coding upstream 179698 53226634 ~ 53226850 (-)
G1187717 NA non-coding upstream 191110 53238046 ~ 53238395 (-)
G1187718 NA non-coding upstream 191518 53238454 ~ 53238695 (-)
G1186670 LOC100194703 other downstream 383693 52659331 ~ 52659809 (-)
G1186381 NA other downstream 1012842 51924963 ~ 52030660 (-)
G1186216 NA other downstream 1032291 52010690 ~ 52011211 (-)
G1186154 NA other downstream 1553261 51489777 ~ 51490241 (-)
G1186075 NA other downstream 1669548 51352309 ~ 51373954 (-)
mosmoa C20H16orf52 other upstream 560088 53607021 ~ 53638313 (-)
si:ch73-374l24.1 LOC105026133 other upstream 759708 53806640 ~ 54049592 (-)
G1188147 NA other upstream 1401947 54448883 ~ 54450020 (-)
G1188127 LOC106601757 other upstream 1418597 54409911 ~ 54470838 (-)
G1188186 LOC106588841 other upstream 1552465 54599401 ~ 54600449 (-)

Expression


Co-expression Network