G1187100


Basic Information

Item Value
gene id G1187100
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53283422 ~ 53283798 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1353831
GTTTATTCACTGTGTTCAACAGagcatactgtatgtactgtaaataCCTCTTCATGTGCAGCATATGTTTACTGCTCAATATTTACTGCTCGTATTACTTATTTAGTCCACATGCAATAAAAGTAATGCAATTCCTCCCTGTACAACCACACTAATGTCACCGTGAGTCAATCAAATCAGAACCAGCCGCTGCCAGCACAGTCTTGACTGGAGTCCAACTCATGAAAACCCTATTTCATTCCCATTCCTCCTAGTGCAGATCCATCCATCCAGTGGTCCCATTAGCGCCCAGTGCCGTGGTCCTCTCCCCAGTCTTTGATCAACAGACAGAATGCCTGTTAAATGCCAGCCTGTCCAGTGTCTGTCCAGTGTCTCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1353831 True 377 lncRNA 0.45 1 53283422 53283798

Neighbor

gene id symbol gene type direction distance location
LOC118938324 NA coding upstream 37934 53228140 ~ 53245488 (+)
LOC110518612 LOC106601692 coding upstream 145124 53133550 ~ 53138298 (+)
LOC110486782 LOC106601683 coding upstream 161018 53116272 ~ 53122404 (+)
LOC110539012 LOC106606743 coding upstream 236484 52907896 ~ 53046938 (+)
leg leg coding upstream 529505 52749848 ~ 52753917 (+)
LOC110538743 LOC106601732 coding downstream 161537 53445335 ~ 53450473 (+)
LOC110538736 LOC106606748 coding downstream 172538 53456336 ~ 53458621 (+)
cdr2a LOC106606747 coding downstream 180412 53464210 ~ 53478284 (+)
trnal-uag-2 NA coding downstream 261685 53545483 ~ 53545564 (+)
LOC110538749 LOC106580644 coding downstream 342236 53626034 ~ 53634165 (+)
G1187099 NA non-coding upstream 229 53282895 ~ 53283193 (+)
G1187098 NA non-coding upstream 1667 53281508 ~ 53281755 (+)
G1187069 NA non-coding upstream 76436 53206722 ~ 53206986 (+)
G1187054 NA non-coding upstream 88882 53187566 ~ 53194540 (+)
G1187043 NA non-coding upstream 98601 53170112 ~ 53184821 (+)
G1187101 NA non-coding downstream 1315 53285113 ~ 53285348 (+)
G1187151 LOC106601727 non-coding downstream 108060 53391858 ~ 53397031 (+)
G1187163 NA non-coding downstream 127793 53411591 ~ 53413101 (+)
G1187167 NA non-coding downstream 136976 53420774 ~ 53421042 (+)
G1187173 NA non-coding downstream 143620 53427418 ~ 53428040 (+)
LOC110486767 alkb7 other upstream 894226 52374824 ~ 52390015 (+)
G1185855 NA other upstream 927481 52274330 ~ 52355941 (+)
G1185815 NA other upstream 1106917 52175266 ~ 52176505 (+)
LOC110486764 LOC106606789 other upstream 1151395 52121483 ~ 52139499 (+)
G1187452 NA other downstream 904769 54188567 ~ 54198015 (+)
G1187390 NA other downstream 980268 54264066 ~ 54265028 (+)
axin2 LOC105026129 other downstream 1007787 54272638 ~ 54300365 (+)
G1188344 NA other downstream 1709876 54993674 ~ 54997295 (+)

Expression


Co-expression Network