G1187750


Basic Information

Item Value
gene id G1187750
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53308264 ~ 53355450 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1354601
caccattctgttgttgggttaagtccacaccattctgttgttggggtaagtccacaccattccATAGAAAagctgcttttatttattttttacatacttACATTTTTAAAActaggaaaactatttcactcatattgtcaTTAactataggtcatatttcattgaaatgtggaaacactggacagttactctAAAGGGACAGACTTATTATGCCAGGTTATTACATATGTACTGTACCATCATGTGTCGGTGCTACGTACTTCCTATAGTTCAATAAGAATCAAATAACGTCATTTTCCTGTGAGGCAAACTTCTTATATGATATTTACTGCACGTACAATAATGGCACAGGATgaacaaataattaaaataaCAGTACAGTCAACAAAGATGAGGAACTGCATTATATTGATTTAAGATGACACTGAATAAGGGAACATCAGTATTGTATGTTTAGAAGCAGAAGACAAAAGGGAATGGTTAAGGTGTTTTGCACTGAATTGATATCTTATGTTGTAAAGTTCTGATATgggactgtatgtgtgtgggttcACTGTCGCCTTTACCGTGTCGAGCATTTTAGATCGTAACCTTTGAACAAAACAGATTTATTTTTGCTACCTTTGTGGTGTTGGTAATGTGAGCAATGTTTGGGCACCTCTGTGTGTAGAACGGACTGTGAGATGTAATGTTCCAAAACTTTAAAAAGCCTTTCTTATTTCCTCACTTTCTTGAAGTAATCGGGGAGAAAAGATCCACTTTGAAGTATTGTAACGGTGTCGAAGTTAGTATCAGCCTGCATGGGGAAGTCTTGTACTGTATCTCCGTCCAAAGGTCTGCTTGCTCTGCCATTTTGGGCCAAACTCTCTGTTCCGCCATTTTGGGGAAATGTGCTCCTGCTGCAATTTAGGGTCTTCCCTCATGCTAGATCTCCCTGGCACTTTTAAACATAATGTAGGCCGCTTGAAGTAGAACACCCGTCCGTGGTAATGTTCACTTATACTAAAAATGTGCTAACTATTTTAGGGGAAAAGGGTGTAACGGACTATTTATTTCTGTCAAGGTGTACCCAGTTACCAAAGGACAAAAAAAATGAAGTATGAAAATAATATTACATGTCATtcgtatctatctatctaattaTCCATTTGCATCTTCTCTGGGGGTTTTAAGTAAAGTCATAATAGCAATGATTTGAtgatgaatatatattttttaaggttTCATCTCTGATAAATGGTATATTTCACAGGGAATTTATTAATGAGCGTAAGTGTTTACGTTGCACCTTAAAAAGCATTGTCCACACAGAACTAAGTCTGCTTTGCGTTGTCCACACAGAACTAAGTTTGCTTTGCGTTGTCCACACAGAACTAAGTTTGCTTTGTGTTTcatttgtttttgtgtttttacAAATGCATTCAAATAACTttttttacttttgattttgtgcTCTTTGTACTTGTTGTCTGTGAGACACTTCTATAAATGAATCTGTATTTTGATGGTGTCTGTTATCCGAAAGCAGAAAAACCAATAGACAAGTGTTTCATTTTTATATATTTGAAGGAAAAAAAACTGGGTTGGGATTGGTTAGGCCTCGGCCTATTTATTTTCCAATTCAGAAGAAATAACGTTCACATCGTGTTGTAGCCATTCCAGTATTTATTTTTCTTATTGAGCCTCGGTGGTTCAGAATGTAACTTTCTACATGAATAAACATACTAGGAGAATATTCAAAGTGATCAGTAATAATGGTGCCATAAAATGAAACCATGGTCAATAGAAACTGGAAAATACACAAGGATCAACGCTAAACAGTCCTGTAACGTCTGTGGACTGATCAGGACAACTACACATTCATGGTACCAAGCtatgcatgttttttttaaagaacactgCTAAGTATTGTTTGGTTCAAATCCTTGTTAACTGCCACCGTTTTGGGTGGGTagatgtctgcatgtgtgtgtggcttgcatttgagtgtgtgggtgtgtgtgtgcgcgtgcgtgcgtgagtgtgtgtat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1354601 True 2030 lncRNA 0.37 2 53308264 53355450

Neighbor

gene id symbol gene type direction distance location
LOC110538731 LOC106592182 coding downstream 57888 53246394 ~ 53250376 (-)
LOC110485222 LOC106601739 coding downstream 200345 53093666 ~ 53107919 (-)
LOC110486776 LOC106606809 coding downstream 566709 52730378 ~ 52741555 (-)
LOC110486769 gtf2f1 coding downstream 878230 52415319 ~ 52430034 (-)
LOC110538721 NA coding downstream 1118561 52186557 ~ 52189703 (-)
LOC110539023 LOC106601728 coding upstream 2910 53358360 ~ 53417730 (-)
LOC118938325 LOC106606746 coding upstream 74582 53430032 ~ 53440075 (-)
LOC110538745 LOC106606750 coding upstream 95104 53450554 ~ 53456191 (-)
mfsd13al tm180 coding upstream 103061 53458511 ~ 53464014 (-)
LOC118938683 NA coding upstream 127804 53483254 ~ 53483362 (-)
G1187736 NA non-coding downstream 21418 53286428 ~ 53286846 (-)
G1187735 NA non-coding downstream 22334 53285703 ~ 53285930 (-)
G1187734 NA non-coding downstream 24150 53283420 ~ 53284114 (-)
G1187718 NA non-coding downstream 69569 53238454 ~ 53238695 (-)
G1187717 NA non-coding downstream 69869 53238046 ~ 53238395 (-)
G1187808 NA non-coding upstream 87426 53442876 ~ 53443299 (-)
G1187821 NA non-coding upstream 126249 53481699 ~ 53481969 (-)
G1187823 NA non-coding upstream 191837 53547287 ~ 53547497 (-)
G1187826 NA non-coding upstream 193649 53549099 ~ 53549316 (-)
G1187779 NA non-coding upstream 337778 53693228 ~ 53697259 (-)
G1186670 LOC100194703 other downstream 648455 52659331 ~ 52659809 (-)
G1186381 NA other downstream 1277604 51924963 ~ 52030660 (-)
G1186216 NA other downstream 1297053 52010690 ~ 52011211 (-)
G1186154 NA other downstream 1818023 51489777 ~ 51490241 (-)
G1186075 NA other downstream 1934310 51352309 ~ 51373954 (-)
mosmoa C20H16orf52 other upstream 251574 53607021 ~ 53638313 (-)
si:ch73-374l24.1 LOC105026133 other upstream 451194 53806640 ~ 54049592 (-)
G1188147 NA other upstream 1093433 54448883 ~ 54450020 (-)
G1188127 LOC106601757 other upstream 1110083 54409911 ~ 54470838 (-)
G1188186 LOC106588841 other upstream 1243951 54599401 ~ 54600449 (-)

Expression


Co-expression Network