G1187779


Basic Information

Item Value
gene id G1187779
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53693228 ~ 53697259 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1354633
ccaagtttaAAAGATTTTTGAaaataaggtaacaaaatgtgtaaagcgtcaggggtctgaattctttccgaatgcactgtaagtcagAATTTCAGTGCAACAAATATGTAGTAAAATGTAGACAGTTATTATAACTTGTATAATTTATTGCTGTGGAAGACAGTCCGCTTTCTTAGTGCAGGTCACATACTGTTCATATTATTCTGAACATCCAATCTACAGCAATCGCCTACTGTCTAGGCTAAGCAGGTCACATACTGGTCATATCATTCTGAACATCCAATCTACATACATAGCCTACTGTCTAGGCTAAGCAGGTCACATACTGTTCATATCATCCTGAACATCCAATCTACATACATAGCCTACTGTCTAGGCTAAGCAAGGCAGCAGATTATGGGTTGTATGAACTACTGATTTTAAGACATAACAGATTTGACTACTGACCAGCACAGTCAGTATGTGATGTGTGTCATCCGTCTTTACAGTGCTATCAACAGATCTGGTCCACCACCATCGCTAGTTCCTAGGTTTGGAGGCACTTAGCATAAAAAAGTACAGGCTCAAGAATTCCAGTGAACAATGACAACAATGCATGACAACATTACATAGATTGCAAAATGCTGCAGTGAAATGATAATTATCACTGCCAAATGTACATGTATTGATTCTTCTAGTTGGCCCATTTTCATTTAACTAGTTTAGATTTGAATATAAACCCCTTCATGTTCTGTGCAAGTTAAGTAGACAAGATATATTCCAATACAGCATAGAAAATGTATACTATGCTTTTCAACTTGGAAAAATGTTGATCCAATCTAGAGATTAGGATTATTTATCtaaatgtaaaacatatttaaaagTATTTATCCGATTTCTCTATAGACAGACATTCCTGGCTACAGTTGTGTGAAACATGACATAACACTCATCTTATAATGACaccttaaataaataaaagtagccTTTTGTCTTGCAGACATTCTTCTAGGTTAAACTCTTATGGTAAACCAGTATTTTAATaataactagggcccagagttgttccttGTTAGGTGGTTGGGGGAAACTTGTTTTAAATAAGAGAAGCATTTAGAAGAATCATTATTGTATTCTGAATTAAATCATAAGACTGAGAAATGGTTGACTGGCTTCATTAAAAGGCAATACAAGGTAAATatttcaggagtaaaaaatgGGATCCCCTTCTAGTACGTAATTGAAGCAAAGTTTTTTCTGTCCTGTGCCAATAGTGCGTACCGCAGATGGCCAAGCAGATCAAACATAGGCTAttcagcacatacagttgaagtcgcaagtttacatacacttaggttggagtcattaaaacttgtttcacGCACTCCACGAAtttctggcaagtcggttagggcatctactttgcgcatgacacaagtcatttttccaacaattgtttgcatacagattgtatcacaattccagtgggtcagaagttgtcatacacaaagttgacttgtgcatttaaacagcttggaaaataccagaaaatgtcatgctttagaagcttctcataggctaattggcataatttgagacaattggaggtgtacctgtggatgtatttcaaggcctaccttcaaactcagtgccactttgcttgacatcatgggaaaatcaaaagaaatcagccaagacctcagaaagaaattgtagacctacacaagtctggttcatccttgggagcaatttccaaacgcctgaaggtaccagattcatctatacaaacaatagtacacaattataaacaccatgggaccacacagccatcataccgctcaggaaagagacacgttctgtctcctagagatgaacgtattttggtgcaaatcgaaaagtgaaaatcaatcccagaacagcagcaaaggaccttgtgaagatgctggaggaaaccggtacaaaagtattcatatccatagtaaaactagtcctatatcgacataacctgaaagtccgctccgcaaggcagaagccactgctccaaaaccgacataaaaaagccagactacggtttgcaactgcacatggggacaaagatcgtactttgtggagaaatgtcctctggtctgatgaaacaaaaatagaactgtttggccataatgaccatcgttatgtttggaggaaaaaagggatgcttgcaagccgaagaacaccatcccaaccatgaagcacgggggtggcagcatcatgttgtgggggtgctttgtggcaggagggactggtgcacttcacaaaatagatggcatcatgaggatggataattatgtggatatattgaagcaacatctcaagacatcagtcaggaagttaaagcttggtcgcaaatgggttttccaaatggacaatgaccccaggcatacttccaaagttgtggcaaaatggcttaaggacaacaaagtcaaggtattggagtggccatcaaagccctgacctcaatcctatagaaaatttgtgggcagagataaaaagcgtgtgcgagcaaggaggcctacaaacctgactcagttacaccagctctgtaaggaggaatgggcaaaaattcacccaacttattgtaggaagcttgtggaaggctacccgaaacgtttgacccaagttaaacaaaggcaatgctaccaaatactaattgagtgtatgtaaacttctgacccactggaaatgtgatgaaagaaataaaagctgaaataaatcactctattctgacatttcacattcttaaaataaagtggtgatcccaactgacctaatactgggaatttttactaggattaaatgtcaggaattgtgagtttaaatgtatttggctaaggtgtatgtaaactaccaacttcaactgtagccaCCAAACTGTCCCAGCCAGCTGAGAAATCAACACCTACTTTTCAAGAGCAGTAACATCTCTCCGGAAAGGGTTTGCAGTGGTCTTAACGCAGGGCTGAAGGAGCACAGTGACATATACAGAGATTTAAATAGAATATAGCCATGTCTGCAAATACCTTGATGCTTCACTCAAGCCCTCAAAGTTCTTGAGAATATTGCTCTTCACTCGCTTGGGCATTGTCCAAGCTTGTTAAGCAAATAGTTGTTTGGCATCGTCTTTCTAAGCAACTATTTGGCAAGACAACATCTAAGCCAAAAGGAGTTGGCTAGTAAAACTGCTAGTTGTTATCAGCACTCCAGGGTAATAGTGGTGGAGAAAGCATAACAAGCTTCAACTGCAATGCCATTCATTCAGGTATAATAAAATTGCCACAGAATGCATATGCTGGACAGTTATGGCACCTCCTATAAGACCATGTACAACCATTTCCAGAGAGATTCACCCATATTGGCAGCGTAGGGAAGACAGATATCAATACTGTATGTGGAATAAACCTCAGTgtaaggggaaaagagaggaggagagacaccaTCTCTGGTTGAGGTGTATGTTGGGATTGAGGAAAGGGAAGTTGGGATGGGGAGTCAGTAgcccagtggtcaccaacccttATCTTGGAGACAGGTGTGTAGGCTTTTGTCATAACCCAGTGCTAAACACACCAGAATCAAGTTCCAGATACGTGGTTATAGGTCAATCTGAACGTTGAACCAGGGGTTTCATTGCTGGGCAGGAACAAAACCCGGCACACCCTGTCAGCTCCTCTCCGGGACCAGGGTGGGTGGTGACCACTGTTGTATAGCCAGTGCAGGTTGAGGTCTAAGGGCCCGCTCACACCTCAGTGCTTCAGTTTCTTGTTGATGCCCATGACCTTGAAGGTGGCTGCGGTGATCTTCTCATACACCACAAACATGAGGGCTGCCGTTAGTACCGTCTGGAGCAGTTTGGCCTCCAGGCCTTTGTATAAGCCCAGCAC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1354633 True 3896 lncRNA 0.41 2 53693228 53697259

Neighbor

gene id symbol gene type direction distance location
LOC110486790 LOC106606738 coding downstream 3024 53680096 ~ 53690204 (-)
LOC110515632 LOC106601741 coding downstream 14000 53663502 ~ 53679228 (-)
LOC110486787 LOC106606732 coding downstream 34402 53641894 ~ 53658826 (-)
mosmoa C20H16orf52 coding downstream 54915 53607021 ~ 53638313 (-)
vwa3a vwa3a coding downstream 95756 53566463 ~ 53597472 (-)
LOC110486791 LOC106601672 coding upstream 1980 53699239 ~ 53708270 (-)
LOC110486794 LOC108245165 coding upstream 15864 53713123 ~ 53725269 (-)
cacng5b LOC106606721 coding upstream 96317 53793576 ~ 53803352 (-)
si:ch73-374l24.1 LOC105026133 coding upstream 109381 53806640 ~ 54049592 (-)
LOC118938612 NA coding upstream 729004 54426263 ~ 54426404 (-)
G1187826 NA non-coding downstream 143912 53549099 ~ 53549316 (-)
G1187823 NA non-coding downstream 145731 53547287 ~ 53547497 (-)
G1187821 NA non-coding downstream 211259 53481699 ~ 53481969 (-)
G1187808 NA non-coding downstream 249929 53442876 ~ 53443299 (-)
G1187750 NA non-coding downstream 337778 53308264 ~ 53355450 (-)
G1187893 cyth3 non-coding upstream 88008 53785267 ~ 53786453 (-)
G1187895 NA non-coding upstream 95048 53792307 ~ 53792865 (-)
G1187930 NA non-coding upstream 180267 53877526 ~ 53877991 (-)
G1187931 NA non-coding upstream 181599 53878858 ~ 53879075 (-)
G1187950 NA non-coding upstream 240201 53937460 ~ 53938325 (-)
G1186670 LOC100194703 other downstream 1033419 52659331 ~ 52659809 (-)
G1186381 NA other downstream 1662568 51924963 ~ 52030660 (-)
G1186216 NA other downstream 1682017 52010690 ~ 52011211 (-)
G1186154 NA other downstream 2202987 51489777 ~ 51490241 (-)
G1188147 NA other upstream 751624 54448883 ~ 54450020 (-)
G1188127 LOC106601757 other upstream 768274 54409911 ~ 54470838 (-)
G1188186 LOC106588841 other upstream 902142 54599401 ~ 54600449 (-)
LOC110486825 LOC106606691 other upstream 1047166 54741479 ~ 54748709 (-)

Expression


Co-expression Network