G1187244


Basic Information

Item Value
gene id G1187244
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53713124 ~ 53716000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1354008
TGTAGGAAAATTAAAGGTTTATTTGTAGTTGGTAAACAATATAGCGTTCATAGTTTGTTTAAAAATACAGTGAGTGATTAACTTCAGTGGAATTTTTTTAATACAAAATAACCAATTGAATTCAAATGATAACCAAAGAtgaatatatacacactacatcGTTACTGACTGTAGCTAAGTTACCGTTACAACATTCCTCAGTCATTTAAATGCTCTCCTTTGCTCCGCCTTCCAAGTAGTTGTGGCTACTGTAAATCAAATGGGCTATTCACGAAGAAATCGCTGCATAAATGGTTTCTGATAAATGCCCAAAGACTAATATAAAAGGTGCTTTTATCTCACATCGACACCCAAAACAGTCCTCACATCCAATCTTCTCATATAAAGTCGCAGGCTTTGTTTTTCTCAGGCAACGATTCGGTTCAGACAGTACAGGGAGGACACGGGTGGGGGATACAACATTTTTGACTAACAGGTTCAACCGTGCAACGAGGCACGCCAGCTCTCCCATTAAATACTGAAGGATCACGCTTTTTCCAATCGACAAAAAAAgcaccagtgtttcccaaactcagtcctagTCTAATTAGATTTATGGTACATTAATTAGTAGTTGGAGGTGAAAATAAAATTGGTGATGCTATTAACTTGGCTAGTTCTGGATTTCCATGTTATAAAGAATGCCACCCCACAAATAGAATGCCATCTTAACCATGTAACCGTTAACTGCAGTGCATCATGCCAAATTATTAGCTGTACTGTTAAGGAGGTAAACCTAAAAAAAATAGCAACAAGTTTAGTGTCTGTCTGCTGTACAGCTTCTAATATCTGCAGTATGCAGTTTGGCAAATTCACTCCACCCAAAACAACCTCTAAAGACTGTAAACAATATGGACTACGAGTAAGAGcaacaaatcaaaaacatttCATCATCCTTCTCACAGAAGTTTAAATCCATTTTTAGAAGGCCTCTGGAATTTCTTACACTTCAGTGATGTCACCCATTCCTAAACCTATCTGTATGTTCAGTTTCTTTTAACAAAGGAACAGTTTGTCCCAGTGCTGTACTAGTAGagactaatatattatatataaaagGAAAGATTCCGAAGTAAAATGCTTTTGTGTCTGCGttgcctgtctccctgcccgGCGAGTGCCCACTTCCCGATACTTCCTGTCTGCGGGGTTCTAGAGCAGGGAGcactttcttctcctcttcttgaCGGGCGGGGGGCAGAGGACCGCCCGGATGGCCTCATCAAACACAGTCTTCAGGCCGCGCTGGGTCAGGGCCGAGCACTCCAGGTACTTCACCGCACCTGAGCgacaggagagagaacgaggagaCTGTTACTACTAATGCATGGCTCTGAAGGGTGTGCATGTGCAGTCCAAGGAGGAGAGAAGCCAGTTACTCTTCACTCACTCTCTTTGAGACATCACTTTCTAAAGCCTTACTCAGAGAGCATGACTACAAGTAATGCATGAGTCCAACCACTTTCTCCTGGTTGAGAAGGTTATCTGCATTCAAAGCATGAATTGTCCCTAACAGTAAACACACTCCCTAAACCTGCATTCATTGTCACTGATAGACACTGAACACATACCGATCTCTTTGGCCATGGCCAGGCCCTGGGGGTAGGTGATAGGGGTGAGTTTCTTCTCCCTGAGCTTCTCGATGGTGTCCTTATCGTCCCTCAGATCCAACTTGGTACCCACTAGGATGATGGGCGTGTTGGGGCAGTGGTGCCTGACCTCTGGGTACCACTATGAAGAGAGACCACATTGGGCATGTCACTTTCATAGGGTTCCCATTCAATTTGTCATTACAGTTTCCATGACTTTTCAAAAGGTTGATCAATATAACCAGTAAAAATCAGTTTAATCTTATGAAGAATCAATATGGACTGTCTTTTCCTAAATGCAGCTCTGAAAAATAGAGCTAGACAATATAAATGTATTTGAACTGATCATCATGTGCTGTAGACAAGCTCCTTGTATTGAATTCTTAAGAGCTATGATGAGTTGCTTCAAACAGGGCACCCACCTTGGCACGGACATTTTCAAACGAGGCAGGACTCACAAGGGAGAAACAGATAAGGAACacatcctggagagagagagagggggaataatCTCAGTCAGTACCTGTGATAATCACTTCCGTAATCACAGTGTTCCTTATATCTAAAACATCCTTATTATTACTCACAGAGACGAGGACTACGCTATTTTttacagaatgtcctgtaagtaCACAAAGGCTTCATTTCAAAcaaaacaatagtaagcaagtttCAGCTGTTCCCATGGCAATGCATGTCTGGTCTGTCAATCTTACCGTCTGTGGGTAGGAGAGGGGGCGGAGTCTGTCGTAGTCCTCCTGCCCTGCTGTATCCCAAAGGCCCAAGTTGACTGGTTTTCCATCCACCATCACATTGGCAGAGTAGTTGTCAAACCTGTAGGGATCAGTCAACCGCTATGAGTTTGGGTATAGGCTAATAATCAATTGCCATATGCCAATTTTATAGCATGATGTCGATCCTCTGAAAGAACCATGCTTAAGACAACAAAGGAGAGAGAAGTGTATCCTATTTAACTTGATGATAGACCAATTTAGACCTGTGACACCAAGTTAgggcaattaattatcaggtagaacagaaaaccagcaggcacCAAACCTCAtggggtaagagttgaatacccatTCAGTGTTGGTTTACATTTACAATaattacaaacattggagttaaaCAAACATACATTTTG

Function

NR:

description
ras-related C3 botulinum toxin substrate 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1354008 True 2775 lncRNA 0.42 2 53713124 53716000

Neighbor

gene id symbol gene type direction distance location
LOC110486793 LOC106601743 coding upstream 431 53707323 ~ 53712693 (+)
LOC110486792 LOC106601749 coding upstream 18754 53690460 ~ 53694370 (+)
LOC110515633 LOC106601742 coding upstream 50903 53658770 ~ 53662221 (+)
LOC110538749 LOC106580644 coding upstream 78959 53626034 ~ 53634165 (+)
trnal-uag-2 NA coding upstream 167560 53545483 ~ 53545564 (+)
LOC110486795 NA coding downstream 8147 53724147 ~ 53727783 (+)
cyth3b LOC105026136 coding downstream 27127 53743127 ~ 53791552 (+)
LOC110538759 NA coding downstream 325745 54041745 ~ 54046402 (+)
cep112 LOC106606716 coding downstream 336748 54052748 ~ 54263997 (+)
axin2 LOC105026129 coding downstream 556638 54272638 ~ 54300365 (+)
G1187253 NA non-coding upstream 43262 53668416 ~ 53669862 (+)
G1187245 LOC106606732 non-coding upstream 59511 53641900 ~ 53653613 (+)
G1187192 NA non-coding upstream 270304 53442564 ~ 53442820 (+)
G1187173 NA non-coding upstream 285084 53427418 ~ 53428040 (+)
G1187167 NA non-coding upstream 292082 53420774 ~ 53421042 (+)
G1187271 NA non-coding downstream 306 53716306 ~ 53720111 (+)
G1187322 NA non-coding downstream 139382 53855382 ~ 53855971 (+)
G1187372 NA non-coding downstream 269631 53985631 ~ 53986350 (+)
G1187376 NA non-coding downstream 294555 54010555 ~ 54011612 (+)
LOC110538743 LOC106601732 other upstream 262660 53445335 ~ 53450473 (+)
LOC110539012 LOC106606743 other upstream 690143 52907896 ~ 53046938 (+)
LOC110486767 alkb7 other upstream 1323928 52374824 ~ 52390015 (+)
G1185855 NA other upstream 1357183 52274330 ~ 52355941 (+)
G1185815 NA other upstream 1536619 52175266 ~ 52176505 (+)
G1187452 NA other downstream 472567 54188567 ~ 54198015 (+)
G1187390 NA other downstream 548066 54264066 ~ 54265028 (+)
G1188344 NA other downstream 1277674 54993674 ~ 54997295 (+)
G1188386 NA other downstream 1405261 55121261 ~ 55122619 (+)

Expression


Co-expression Network