G1187930


Basic Information

Item Value
gene id G1187930
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53877526 ~ 53877991 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1354802
caacccactcccatcccctccctacctctcaacccactcccatcccctcactacctctcaacccactcccatcccctcactacctctcaacccactcccatcccctcactacctctcaacccactcccatcccctcactatttctcaacccactcccataccctccctacctctcaactcactcccatGCCCTTACTActtctcaacccactcccatcccctcacaacctctcaacccactcccatcccctcactacctctcaacccactcccatcccctcactacctctcaacccactcccatcccctcactacctctcaacccactcccatcccctcactacctctcaacccactcctatcccctcactacctctcaacccactcccatcccctcactacctctcaacccactcccaccccctcactacctctcaacccactcctatcccttcactacctctca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1354802 True 466 lncRNA 0.57 1 53877526 53877991

Neighbor

gene id symbol gene type direction distance location
cacng5b LOC106606721 coding downstream 74174 53793576 ~ 53803352 (-)
LOC110486794 LOC108245165 coding downstream 152257 53713123 ~ 53725269 (-)
LOC110486791 LOC106601672 coding downstream 169256 53699239 ~ 53708270 (-)
LOC110486790 LOC106606738 coding downstream 187322 53680096 ~ 53690204 (-)
LOC110515632 LOC106601741 coding downstream 198298 53663502 ~ 53679228 (-)
LOC118938612 NA coding upstream 548272 54426263 ~ 54426404 (-)
LOC110538769 NA coding upstream 548445 54426436 ~ 54427451 (-)
LOC118938329 aqp8 coding upstream 858723 54736714 ~ 54740723 (-)
LOC110486825 LOC106606691 coding upstream 863488 54741479 ~ 54748709 (-)
LOC110485228 LOC106606689 coding upstream 935131 54813122 ~ 54831352 (-)
G1187895 NA non-coding downstream 84661 53792307 ~ 53792865 (-)
G1187893 cyth3 non-coding downstream 91073 53785267 ~ 53786453 (-)
G1187779 NA non-coding downstream 180267 53693228 ~ 53697259 (-)
G1187826 NA non-coding downstream 328210 53549099 ~ 53549316 (-)
G1187823 NA non-coding downstream 330029 53547287 ~ 53547497 (-)
G1187931 NA non-coding upstream 867 53878858 ~ 53879075 (-)
G1187950 NA non-coding upstream 59469 53937460 ~ 53938325 (-)
G1187972 NA non-coding upstream 109241 53987232 ~ 53987767 (-)
G1187975 NA non-coding upstream 129387 54007378 ~ 54007651 (-)
G1187986 NA non-coding upstream 147484 54025475 ~ 54033092 (-)
si:ch73-374l24.1 LOC105026133 other downstream 66769 53806640 ~ 54049592 (-)
mosmoa C20H16orf52 other downstream 239713 53607021 ~ 53638313 (-)
G1186670 LOC100194703 other downstream 1217717 52659331 ~ 52659809 (-)
G1186381 NA other downstream 1846866 51924963 ~ 52030660 (-)
G1186216 NA other downstream 1866315 52010690 ~ 52011211 (-)
G1188147 NA other upstream 570892 54448883 ~ 54450020 (-)
G1188127 LOC106601757 other upstream 587542 54409911 ~ 54470838 (-)
G1188186 LOC106588841 other upstream 721410 54599401 ~ 54600449 (-)

Expression


Co-expression Network