G1187433


Basic Information

Item Value
gene id G1187433
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54147198 ~ 54147698 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1354215
TAATACCACATGAAGCTACCGGTAACATGCTGATAATACTACATGAAACTACAGGTAACATACTGATAATACTACATGAAACTACCGGTAACATACTGATAATACTACATGAAACTACCGGTAACATACTGATAATACTACATGAAACTACAGGTACCATACTGATAGTACTACATGAAACTACAGGTAACATGCTGATAATACTACATGAAACTACAGGTAACATACTGATAATAC

Function

NR:

description
syntaxin-binding protein 4-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1354215 True 237 lncRNA 0.34 2 54147198 54147698

Neighbor

gene id symbol gene type direction distance location
LOC110538759 NA coding upstream 100796 54041745 ~ 54046402 (+)
cyth3b LOC105026136 coding upstream 355646 53743127 ~ 53791552 (+)
LOC110486795 NA coding upstream 419415 53724147 ~ 53727783 (+)
LOC110486793 LOC106601743 coding upstream 434505 53707323 ~ 53712693 (+)
LOC110486792 LOC106601749 coding upstream 452828 53690460 ~ 53694370 (+)
axin2 LOC105026129 coding downstream 124940 54272638 ~ 54300365 (+)
tex2 LOC106599243 coding downstream 237807 54385505 ~ 54425642 (+)
LOC110538772 ern1 coding downstream 279867 54427565 ~ 54455175 (+)
samd9l LOC106601757 coding downstream 309857 54457555 ~ 54544268 (+)
LOC118936451 LOC106606683 coding downstream 417590 54565288 ~ 54592971 (+)
G1187376 NA non-coding upstream 135586 54010555 ~ 54011612 (+)
G1187372 NA non-coding upstream 160848 53985631 ~ 53986350 (+)
G1187322 NA non-coding upstream 291227 53855382 ~ 53855971 (+)
G1187271 NA non-coding upstream 427087 53716306 ~ 53720111 (+)
G1187452 NA non-coding downstream 40869 54188567 ~ 54198015 (+)
G1187486 NA non-coding downstream 121621 54269319 ~ 54269899 (+)
G1187524 NA non-coding downstream 200304 54348002 ~ 54348250 (+)
G1187532 NA non-coding downstream 222914 54370612 ~ 54372602 (+)
LOC110538743 LOC106601732 other upstream 696734 53445335 ~ 53450473 (+)
LOC110539012 LOC106606743 other upstream 1124217 52907896 ~ 53046938 (+)
LOC110486767 alkb7 other upstream 1758002 52374824 ~ 52390015 (+)
G1185855 NA other upstream 1791257 52274330 ~ 52355941 (+)
G1185815 NA other upstream 1970693 52175266 ~ 52176505 (+)
G1187390 NA other downstream 116368 54264066 ~ 54265028 (+)
G1188344 NA other downstream 845976 54993674 ~ 54997295 (+)
G1188386 NA other downstream 973563 55121261 ~ 55122619 (+)

Expression


Co-expression Network