G1188189



Basic Information


Item Value
gene id G1188189
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54608498 ~ 54610515 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1355106
ctcaatattaggaaggtgttcataatgttttgtacgctcagtgtatAACTGTATTGAATCTCAGAGCTGTTTACATTGTGCAGACTGTACCAAGTCCCCGGGGGGAGGTAGGCAGCCAGCTCCACTGCCCCCTGCTCTAACACTGGGCTGACAAGCAGAGAACTCCCCCACAGGAACTGTCTGTCTATGGTCTGGCAGTTAGGGTCCGAGGGGAACctgggagagatggacagagagggagggccaGAGAACAGTATCAACACAGTAAATAAGATGTGTTACAATAGTATCCAAatgttgaagagagagagaagggaCGTACTGGAGGAAGAGAGGCGTGGCCACAGTGTCTGCGGAGGTGTGTGCGTGGTAGAAGAGTGTGTAGAGGAACGGCAGGAGAGAGTAACGTAACATCACCGCGCTACGCATGGCTGTCTGGGCCTCCTGACCAAACACATAGGGCTCCTGGGGCTACACACAGAGCTAGAGTTACCTCAATTCATAATACATGGGACTGATGGACTGTTACATAGACACAGTGAAAAGACACTAGCAGGTCAGCCACCATGGTAAATAGGAAAACATTGTAACTTGGTTACATAGAGACAGTGAAAAGATATTAGCAGGTCAGGAAAAGATTGCGGTAAATTCCTATCCAACCGAGTTAACTGTAAAGACCATAAAACCACCCACACCCACAGCGTTGGGCTTGTCGTTGTGGTTCCTCATGAAGGGGTAGAAGGCTCCAAGCTGGGTCCAGCGTACACAcagctcctctgtggtgtcccCCCTGAACCCACACACATCCGCCCCCACCAGGGGCACCCCGAACAGGCCAAACAGCAGCACCGCTGGGGGGGTGGAGGGACAGatggatattaaacatattaaTTCCCTTTATTCATTATTACTGTATTCATTATTTAACTTTGATGTCAGGCAGTCAGAGgcatctctctgtacttgctAGCTACATAGTATCAAATAAATAGTAGGTGGTTCCATTACAAGTCTGGGCATTTTTCTATTCAAACCCCTCATTCAAATCCATGGATAACTCCCACTGAAAAGGCTCCAACTCTGTCTAGGCACTCTTTCAACTAAAGACAATAGAGACAAACTGCTGAGTAAGAGCACACTGCAACATGTACTGTCTGGATGGTGCATCGGTACCATTAGTACTCTGATGGCTAAAACACACAGGGCTTGTGAATGGCTTTGGGAATCTTGTTGAGAATAGGAATGGCTTGGAACGGAAATGGGAATGTTGGGGATGTCTTTCCCCTCACCAGGGATGGAGTATCTGAGCTGCTCCCAGTCGCTCCTCACGTCTCCCGTCCAGACTCCGGAGAAACGGCCAATGCCAGGGAAGGAGGAGCGGGACAGCACGAAGGGTCGCGACCCCCGGACCTTCACCAGGGCACTGAGAGGGTCAAAGGCTATAACTGATCTTCCAACTACAGTTACAAATATGTAATGTAGACAAGATAAATAAAATCAGCTTCATTCAAACAAGCAGAAGTAAAAGTGCCAACAGTCTCAGGATAAGTACGCACTGATCCCTGTGGTGCTGTGTCTGACCTGTGGGTGGCGCTAGCCTCCGTCAGCCCATAGAGGTTATGCAGGTTGTAGTGAGTGGACAGGTTCTGCTGAGCTGACATGCAGAGTGTACCAGTGTTCAGCTGTCCTCCAATCACCG
>TU1355105
ctcaatattaggaaggtgttcataatgttttgtacgctcagtgtatAACTGTATTGAATCTCAGAGCTGTTTACATTGTGCAGACTGTACCAAGTCCCCGGGGGGAGGTAGGCAGCCAGCTCCACTGCCCCCTGCTCTAACACTGGGCTGACAAGCAGAGAACTCCCCCACAGGAACTGTCTGTCTATGGTCTGGCAGTTAGGGTCCGAGGGGAACctgggagagatggacagagagggagggccaGAGAACAGTATCAACACAGTAAATAAGATGTGTTACAATAGTATCCAAatgttgaagagagagagaagggaCGTACTGGAGGAAGAGAGGCGTGGCCACAGTGTCTGCGGAGGTGTGTGCGTGGTAGAAGAGTGTGTAGAGGAACGGCAGGAGAGAGTAACGTAACATCACCGCGCTACGCATGGCTGTCTGGGCCTCCTGACCAAACACATAGGGCTCCTGGGGCTACACACAGAGCTAGAGTTACCTCAATTCATAATACATGGGACTGATGGACTGTTACATAGACACAGTGAAAAGACACTAGCAGGTCAGCCACCATGGTAAATAGGAAAACATTGTAACTTGGTTACATAGAGACAGTGAAAAGACACTAGCAGGTCAGCCACCATGGTAAATAGGAAAACATTGTAACTTGGTTACATAGAG

Function


NR:

description
lysosomal alpha-glucosidase isoform X1

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1355106 False 1699 lncRNA 0.49 3 54608498 54610515
TU1355105 True 675 lncRNA 0.49 2 54609802 54610515

Neighbor


gene id symbol gene type direction distance location
LOC110538769 NA coding downstream 181047 54426436 ~ 54427451 (-)
LOC118938612 NA coding downstream 182094 54426263 ~ 54426404 (-)
si:ch73-374l24.1 LOC105026133 coding downstream 558906 53806640 ~ 54049592 (-)
cacng5b LOC106606721 coding downstream 805146 53793576 ~ 53803352 (-)
LOC110486794 LOC108245165 coding downstream 883229 53713123 ~ 53725269 (-)
LOC118938329 aqp8 coding upstream 126199 54736714 ~ 54740723 (-)
LOC110486825 LOC106606691 coding upstream 130964 54741479 ~ 54748709 (-)
LOC110485228 LOC106606689 coding upstream 202607 54813122 ~ 54831352 (-)
LOC110486827 LOC106606694 coding upstream 222595 54809618 ~ 54889445 (-)
trnaa-ugc-61 NA coding upstream 245020 54855535 ~ 54855610 (-)
G1188130 NA non-coding downstream 15378 54541945 ~ 54593120 (-)
G1188128 NA non-coding downstream 58865 54457610 ~ 54549633 (-)
G1188161 NA non-coding downstream 83853 54523698 ~ 54524645 (-)
G1188155 NA non-coding downstream 91356 54512178 ~ 54517142 (-)
G1188127 LOC106601757 non-coding downstream 137660 54409911 ~ 54470838 (-)
G1188197 NA non-coding upstream 37768 54648283 ~ 54648896 (-)
G1188198 NA non-coding upstream 46355 54656870 ~ 54657166 (-)
G1188204 NA non-coding upstream 79310 54689825 ~ 54691458 (-)
G1188232 NA non-coding upstream 151518 54762033 ~ 54762940 (-)
G1188235 NA non-coding upstream 155050 54765565 ~ 54767157 (-)
G1188186 LOC106588841 other downstream 8049 54599401 ~ 54600449 (-)
G1188147 NA other downstream 158478 54448883 ~ 54450020 (-)
mosmoa C20H16orf52 other downstream 970685 53607021 ~ 53638313 (-)
LOC110486836 LOC106606701 other upstream 412133 55022619 ~ 55026465 (-)
LOC110516592 LOC106601772 other upstream 600984 55209614 ~ 55242150 (-)
LOC110485238 LOC106601829 other upstream 824301 55434816 ~ 55509918 (-)

Expression



Co-expression Network