G1187579


Basic Information

Item Value
gene id G1187579
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54648558 ~ 54648781 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1354399
aggagggactggtgcacttcacaaaatagatggcatcatgaggaaagaaaattgtgtggatatattgaagcaacaactcaagacatcagtcaggaagttaaagcttggtcgcaaatgggtcttccaaatggacaatgaccccaagcatacttccaaagttgtggcaaaatggcttaaggacaacaaagtcaagatattggagtggccatcacaaagccctgacc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1354399 True 224 lncRNA 0.43 1 54648558 54648781

Neighbor

gene id symbol gene type direction distance location
LOC110515422 LOC106606686 coding upstream 8816 54614037 ~ 54639742 (+)
LOC118938328 LOC106601771 coding upstream 35122 54599341 ~ 54613436 (+)
LOC118936451 LOC106606683 coding upstream 55587 54565288 ~ 54592971 (+)
samd9l LOC106601757 coding upstream 104290 54457555 ~ 54544268 (+)
LOC110538772 ern1 coding upstream 193383 54427565 ~ 54455175 (+)
LOC118938094 NA coding downstream 6366 54655147 ~ 54655863 (+)
LOC110486813 LOC106606687 coding downstream 52324 54701105 ~ 54710557 (+)
LOC110486816 LOC106606673 coding downstream 68829 54717610 ~ 54720302 (+)
LOC110486811 LOC106601768 coding downstream 71880 54720661 ~ 54731365 (+)
LOC110485227 LOC106606653 coding downstream 107101 54755882 ~ 54810128 (+)
G1187571 NA non-coding upstream 45990 54602241 ~ 54602568 (+)
G1187532 NA non-coding upstream 275956 54370612 ~ 54372602 (+)
G1187524 NA non-coding upstream 300308 54348002 ~ 54348250 (+)
G1187582 NA non-coding downstream 8925 54657706 ~ 54658404 (+)
G1187583 NA non-coding downstream 11504 54660285 ~ 54660565 (+)
G1187584 NA non-coding downstream 13044 54661825 ~ 54662314 (+)
G1187585 NA non-coding downstream 23778 54672559 ~ 54672973 (+)
G1187586 NA non-coding downstream 25502 54674283 ~ 54674486 (+)
axin2 LOC105026129 other upstream 348245 54272638 ~ 54300365 (+)
G1187390 NA other upstream 383530 54264066 ~ 54265028 (+)
G1187452 NA other upstream 450543 54188567 ~ 54198015 (+)
LOC110538743 LOC106601732 other upstream 1198094 53445335 ~ 53450473 (+)
LOC110539012 LOC106606743 other upstream 1625577 52907896 ~ 53046938 (+)
G1188344 NA other downstream 344893 54993674 ~ 54997295 (+)
G1188386 NA other downstream 472480 55121261 ~ 55122619 (+)
LOC110539040 LOC106601832 other downstream 691943 55340702 ~ 55394765 (+)
G1189040 NA other downstream 1289691 55938472 ~ 55939357 (+)
G1189738 NA other downstream 2187635 56836416 ~ 56836996 (+)

Expression


Co-expression Network