G1188281


Basic Information

Item Value
gene id G1188281
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54868567 ~ 54873998 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1355225
cttcagctccattcagcccctcccatctatctctcaacaccatccagtcccacccttcagctccattcagccctcccatctatctctcaacaccatccagtcccacccttcagctccattcaacccctcccatctatctcttaacaccatccagtcccacccttcagctccattcaaccatcccatctatctcttaacaccatccagtcccacccttcagctccattcaaccatcccatctatctcttaacaccatccagtcccacccttcagctccattcaaccatcccatctatctcttaacaccatccagtcccacccttcagctccattcaaccatcccatctatctcttaacaccatccagtcccacccttcagctccattcaaccatcccatctatctcttaacaccatccagtcccacccttcagctccattcaaccatcccatctatctcttaacaccatccagtcccacccttcagctccattcaaccatcccatctatctcttaacaccatccattttagatttatttttgccatgtatttttcaactgtgctctgatgtttcacaaaagtgcTGAACCTTtatattctcatagcttctacagattgtaaattaaaaatgttgctaaaataattattatgttattgattgattgactattgcttttcaaatcacccattATTGCTATCTGCactgttagttctaggcaaatgttgcaattcttcagccattcctggacctgtgaccaaaaatgagctacatatgtacaataccaaaataaatgatctaatgactctgcctcctcacagcaaaatctgcagagctgggaagattgtatgccccatatatataacattctattagttgcaagaattttgaaTAGTAATTGAAATTGAAAAATCCAAAGTTTTGAATCtggcgttgttttgcgtatcaattcataaaccacgTGCCATagaatgggtacatcgaaaatctcttcccaactattttgatatttatatggcacagctgtcagtttttggtccttaaatgaaattggtatgtTTTtattatcacacttttctttaaccatttatgttctttaatacagggccgacatacaagttccttacttttttccccttctacttgcctcttccatttttgtggtcatgctgcaattaattggttgtaattttgggtagagcagacatttccatatgtctgtgttagctgcatgtgtaacTCCCctagtcctatttatgatatcattcactaaatatatacct

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1355225 True 1280 lncRNA 0.40 2 54868567 54873998

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-61 NA coding downstream 12957 54855535 ~ 54855610 (-)
LOC110485228 LOC106606689 coding downstream 37215 54813122 ~ 54831352 (-)
LOC110486825 LOC106606691 coding downstream 119858 54741479 ~ 54748709 (-)
LOC118938329 aqp8 coding downstream 127844 54736714 ~ 54740723 (-)
LOC110538769 NA coding downstream 441116 54426436 ~ 54427451 (-)
LOC118938095 LOC106601785 coding upstream 15607 54889605 ~ 54890333 (-)
LOC110486831 e4f1 coding upstream 21068 54895066 ~ 54907473 (-)
LOC110486844 LOC106606699 coding upstream 59168 54933166 ~ 54938835 (-)
LOC110485232 LOC106606700 coding upstream 72363 54946361 ~ 54975807 (-)
LOC118938330 LOC106601777 coding upstream 129962 55003960 ~ 55011294 (-)
G1188275 NA non-coding downstream 14091 54854105 ~ 54854476 (-)
G1188270 NA non-coding downstream 20261 54845460 ~ 54848306 (-)
LOC110486827 LOC106606694 non-coding downstream 34915 54809618 ~ 54889445 (-)
G1188259 NA non-coding downstream 51053 54816985 ~ 54817514 (-)
G1188257 NA non-coding downstream 52101 54814810 ~ 54816466 (-)
G1188311 LOC106606697 non-coding upstream 57726 54931724 ~ 54974451 (-)
G1188327 NA non-coding upstream 102198 54976196 ~ 54976771 (-)
G1188342 NA non-coding upstream 118528 54992526 ~ 54992792 (-)
G1188399 NA non-coding upstream 125535 54999533 ~ 55002316 (-)
G1188402 NA non-coding upstream 138948 55012946 ~ 55013237 (-)
G1188186 LOC106588841 other downstream 268118 54599401 ~ 54600449 (-)
G1188127 LOC106601757 other downstream 397729 54409911 ~ 54470838 (-)
G1188147 NA other downstream 418547 54448883 ~ 54450020 (-)
LOC110486836 LOC106606701 other upstream 148650 55022619 ~ 55026465 (-)
LOC110516592 LOC106601772 other upstream 337501 55209614 ~ 55242150 (-)
LOC110485238 LOC106601829 other upstream 560818 55434816 ~ 55509918 (-)
G1189279 LOC106601786 other upstream 1038226 55912224 ~ 55915885 (-)
LOC110485237 LOC106606659 other upstream 1233946 56088292 ~ 56110984 (-)

Expression


Co-expression Network