G1188399


Basic Information

Item Value
gene id G1188399
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54999533 ~ 55002316 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1355390
acaatttctaagatgttactgagttacagttcatatgaggaaatcagtcaatttaaatgcattcattaggccctaatctatgaatttcacatgactgggaatacagatttgTATCTGTTGGTcaaactctccctcaatgtgagcaagacaaaggagatgattctggactacaggaaaaggagggccgaacacgccaCCATTCAcatcgaaggggctgtagtggagcaggtcgagagtttcaagttccttggtgtccacatcaccaacaaactaacatggtccaaacacatcaacacagtcctgaagagggcacaacaaaacctttccccctcaggaaactgaaaagatttgtcatgggtcccagatcctcaaaaagttatacagctacaccatcgagagcggTTCTATCAcatcctggtatggcaactgctcggcctccgaccataaggcgctacagggggtagtgcgtacgcccagtacatcactgggacaaagcttcctgccatccaagacctataCGCTAGACAGTGTctgaggaaggcccaaaaaattgtcaaagactccagtcacccaagtcatagactgttctctctgctaccgcacggcaagcggttccggagctccaagtctaggtccaaaaggctccttaattaACAGCTtccatccccaagccataagactgctgaacaattaatcaaatggtcacCCGGACTGTTTACATTGACTTCccccttttgtttttacactgctgctactgtttgttatctatgcatagtcactttacccccacctgtacccccgcacattgacttggtaccggtaccccctgtatatagcctcgttattgttattttattgttacttttattaaattttttccgttagtttatatagcaaatattttcttaactctatttcttgaactgcattgttggttaagggcttgtaagttagcatttcacggtaagatctacacctgttgtattcggcgcatgtgacaaataacatttgatttgatttgatggtaaagaaattaacatgaaattctctggcaaagctctggtggacattcctgcagtcagcatggcaattgcacgctccctcaaaactttaacatttgtggcattgtgttgtatgacaaaaaaatgtaattttagagtggccttttattgttcacagcacaaggtgcacctgtgtaatgatgttTAATCAAAGTaatgatgtttaatcagcttctacatatgtcacacctgtcaggtggatggattatcttggcaaaggagaaatgctcactaatagggttGTAAAAAAACATGTgctcaacatttgagagaaataacctTGTGCGTGTGGAAcacttctgggatcttttatttcagctcatgaaacatgggaccaacactttacatgttgcgttcacattattgttcagtgtacatttacAGAACTTCTGATCATTTTCTTGCCTTAGTACCCGTTCATGGACTATTAACACATTGTTTTCATCAGAAGAGAAATGTGTGAAATTTCCCGGCAATCAGTAAATACTACTGGGCAAAATTCTAAATCATCCCATCAGTGTCATACTATGTACAATATATGGGAAGATCTAGACAATGGGGACTGTCTAAttgttatgattttttttttttgcagtattgcgGACATGCAGAGACGCAAACAATTAAGTTGGGTTCCTTTTCATCTCCCACATTGTGACCTTCCAGTATAGAGCTTTGCTTTGGTGTGGATTTAGACTTATATGTTCACATCAGTTGTGTTTCTCCATTGTATTCACTTTTCCATGACCTATTGTGAATTGTGTTTCTGTGCAGCtatggaaagtttttttttaaactatcaGCTAACCAACTTTTGAATTGAATACATGGAATTGGATTGTGATGATACCGATGAATGAGTCCTGCACACAATGTGCTTATTTTTTTTCAATGTTTTTACCAGGAATTATATTTGATTTCCTGTGTATGAAATTGTTTGGTGAAATAGTATTTGCCCATCATTCCACAGCTTTAGATAGTTGTGCTTCCAATTTTAATCATCAGGATTTAGTgaccaaaaaatataaatataaataaatgtgttGATCTACTGGGATTTTTAAAATACTTTTAACTTCCTGTTTTGTCTGCTTGGACTCGGGAGATAAGTATGGTTGTGTTAATGTTCTTGCAGGCAGTCATGTtcttttgatgaatttatttatGTTTTGAGAAGGCAACTTCACCTTGAAAACCTTTGCAAAAGCCCACAAAGTTCTGTTTCTTGTGGATTCTTGTTAtgaaaatcaacaaaaaatgctTGTACCGGATTGAGATAGACTGTAATAAACTATGAACTGTGGTACTCTAGTAATCTAAACATTTCAATAACTAAGTGGATGGAAAAAGCTTACTGACCGCGACTGGACAGAATATAGTGGTCAGGAGGACAGGCAGGCTAGCTCTCACCAGCTCTGCATACTGTAACAATCCCAAACCTTCCACCTTCCATGAAGAGTGCAGTTACAGCTTTTCACCTGTTGATGGTGCTGCCCACTGTGATAATATTAGTCCCTTGTAGATCGAGATCCATGCTTTCTttgtaacctacagtatgttaagcGTTTGGCTGATGGAAGATTTGTACATGAGAGGATGTATTTTGGTGTTTATTGTAACCTCAATCAATCAAAGGCCATGTGACCACAATGTATCTGACATGGAGATGGTATCAGAGATGAGTCAAGCCACTAGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1355390 True 2757 lncRNA 0.39 2 54999533 55002316

Neighbor

gene id symbol gene type direction distance location
LOC110485232 LOC106606700 coding downstream 23726 54946361 ~ 54975807 (-)
LOC110486844 LOC106606699 coding downstream 60698 54933166 ~ 54938835 (-)
LOC110486831 e4f1 coding downstream 92060 54895066 ~ 54907473 (-)
LOC118938095 LOC106601785 coding downstream 109200 54889605 ~ 54890333 (-)
trnaa-ugc-61 NA coding downstream 143923 54855535 ~ 54855610 (-)
LOC118938330 LOC106601777 coding upstream 1644 55003960 ~ 55011294 (-)
LOC110486834 LOC106601778 coding upstream 11539 55013855 ~ 55016528 (-)
LOC110486836 LOC106606701 coding upstream 20303 55022619 ~ 55026465 (-)
LOC110514491 LOC106606702 coding upstream 27221 55029537 ~ 55159189 (-)
LOC110516592 LOC106601772 coding upstream 207298 55209614 ~ 55242150 (-)
G1188342 NA non-coding downstream 6741 54992526 ~ 54992792 (-)
G1188327 NA non-coding downstream 22762 54976196 ~ 54976771 (-)
G1188311 LOC106606697 non-coding downstream 25082 54931724 ~ 54974451 (-)
G1188281 NA non-coding downstream 125535 54868567 ~ 54873998 (-)
G1188275 NA non-coding downstream 145057 54854105 ~ 54854476 (-)
G1188402 NA non-coding upstream 10630 55012946 ~ 55013237 (-)
G1188404 NA non-coding upstream 16674 55018990 ~ 55019272 (-)
G1188408 NA non-coding upstream 24804 55027120 ~ 55027376 (-)
G1188412 NA non-coding upstream 35438 55037754 ~ 55038280 (-)
G1188459 NA non-coding upstream 159788 55162104 ~ 55162455 (-)
LOC110485228 LOC106606689 other downstream 168211 54813122 ~ 54831352 (-)
LOC110486825 LOC106606691 other downstream 250875 54741479 ~ 54748709 (-)
G1188186 LOC106588841 other downstream 399084 54599401 ~ 54600449 (-)
G1188127 LOC106601757 other downstream 528695 54409911 ~ 54470838 (-)
G1188147 NA other downstream 549513 54448883 ~ 54450020 (-)
LOC110485238 LOC106601829 other upstream 432500 55434816 ~ 55509918 (-)
G1189279 LOC106601786 other upstream 909908 55912224 ~ 55915885 (-)
LOC110485237 LOC106606659 other upstream 1105628 56088292 ~ 56110984 (-)

Expression


Co-expression Network