G1188343


Basic Information

Item Value
gene id G1188343
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55000484 ~ 55002271 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1355294
ATGGAAAAGTGAATACAATGGAGAAACACAACTGATGTGAACATATAAGTCTAAATCCACACCAAAGCAAAGCTCTATACTGGAAGGTCACAATGTGGGAGATGAAAAGGAACCCAACTTAATTGTTTGCGTCTCTGCATGTCcgcaatactgcaaaaaaaaaaaatcataacaaTTAGACAGTCCCCATTGTCTAGATCTTCCCATATATTGTACATAGTATGACACTGATGGGATGATTTAGAATTTTGCCCAGTAGTATTTACTGATTGCCGGGAAATTTCACACATTTCTCTTCTGATGAAAACAATGTGTTAATAGTCCATGAACGGGTACTAAGGCAAGAAAATGATCAGAAGTTCTgtaaatgtacactgaacaataatgtgaacgcaacatgtaaagtgttggtcccatgtttcatgagctgaaataaaagatcccagaagtgTTCCACACGCACAaggttatttctctcaaatgttgagcACATGTTTTTTTACaaccctattagtgagcatttctcctttgccaagataatccatccacctgacaggtgtgacatatgtagaagctgattaaacatcattACTTTGATTAaacatcattacacaggtgcaccttgtgctgtgaacaataaaaggccactctaaaattacatttttttgtcatacaacacaatgccacaaatgttaaagttttgagggagcgtgcaattgccatgctgactgcaggaatgtccaccagagctttgccagagaatttcatgttaatttctttaccatcaaatcaaatcaaatgttatttgtcacatgcgccgaatacaacaggtgtagatcttaccgtgaaatgctaacttacaagcccttaaccaacaatgcagttcaagaaatagagttaagaaaatatttgctatataaactaacggaaaaaatttaataaaagtaacaataaaataacaataacgaggctatatacagggggtaccggtaccaagtcaatgtgcgggggtacaggtgggggtaaagtgactatgcatagataacaaacagtagcagcagtgtaaaaacaaaaggggGAAGTCAATGTAAACAGTCCGGgtgaccatttgattaattgttcagcagtcttatggcttggggatggaAGCTGTtaattaaggagccttttggacctagacttggagctccggaaccgcttgccgtgcggtagcagagagaacagtctatgacttgggtgactggagtctttgacaattttttgggccttcctcagACACTGTCTAGCGtataggtcttggatggcaggaagctttgtcccagtgatgtactgggcgtacgcactaccccctgtagcgccttatggtcggaggccgagcagttgccataccaggatgTGATAGAAccgctctcgatggtgtagctgtataactttttgaggatctgggacccatgacaaatcttttcagtttcctgagggggaaaggttttgttgtgccctcttcaggactgtgttgatgtgtttggaccatgttagtttgttggtgatgtggacaccaaggaacttgaaactctcgacctgctccactacagccccttcgatgTGAATGGtggcgtgttcggccctccttttcctgtagtccagaatcatctcctttgtcttgctcacattgagggagagtttgACCAACAGATAcaaatctgtattcccagtcatgtgaaattcatagattagggcctaatgaatgcatttaaattgact

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1355294 True 1761 lncRNA 0.41 2 55000484 55002271

Neighbor

gene id symbol gene type direction distance location
LOC110486846 LOC106601652 coding upstream 59993 54939020 ~ 54940491 (+)
narfl LOC106606697 coding upstream 67062 54925567 ~ 54933422 (+)
LOC110486830 LOC106606695 coding upstream 75043 54907568 ~ 54925441 (+)
LOC110485227 LOC106606653 coding upstream 190356 54755882 ~ 54810128 (+)
LOC110486811 LOC106601768 coding upstream 269119 54720661 ~ 54731365 (+)
LOC110539040 LOC106601832 coding downstream 338431 55340702 ~ 55394765 (+)
LOC110538788 bri3 coding downstream 422594 55424865 ~ 56123584 (+)
LOC110538766 LOC105013005 coding downstream 831840 55834111 ~ 55915904 (+)
LOC110485236 LOC106606588 coding downstream 1033369 56035640 ~ 56088193 (+)
LOC110486855 bri3 coding downstream 1111892 56114163 ~ 56121445 (+)
G1188334 NA non-coding upstream 15704 54984466 ~ 54984780 (+)
G1188331 NA non-coding upstream 18010 54982232 ~ 54982474 (+)
G1188328 NA non-coding upstream 20595 54979619 ~ 54979889 (+)
G1187645 NA non-coding upstream 165101 54833998 ~ 54835383 (+)
G1187638 NA non-coding upstream 173526 54826415 ~ 54826958 (+)
G1188347 LOC106601778 non-coding downstream 11597 55013868 ~ 55016506 (+)
G1188352 LOC106606701 non-coding downstream 21152 55023423 ~ 55026525 (+)
G1188355 NA non-coding downstream 25433 55027704 ~ 55028092 (+)
G1188375 NA non-coding downstream 79944 55082215 ~ 55082736 (+)
G1188385 NA non-coding downstream 117515 55119786 ~ 55120235 (+)
G1188344 NA other upstream 3189 54993674 ~ 54997295 (+)
axin2 LOC105026129 other upstream 700171 54272638 ~ 54300365 (+)
G1187390 NA other upstream 735456 54264066 ~ 54265028 (+)
G1187452 NA other upstream 802469 54188567 ~ 54198015 (+)
LOC110538743 LOC106601732 other upstream 1550020 53445335 ~ 53450473 (+)
G1188386 NA other downstream 118990 55121261 ~ 55122619 (+)
G1189040 NA other downstream 936201 55938472 ~ 55939357 (+)
G1189738 NA other downstream 1834145 56836416 ~ 56836996 (+)
G1189675 srebf1 other downstream 1875657 56877928 ~ 56925607 (+)

Expression


Co-expression Network