G1188347 (LOC106601778)


Basic Information

Item Value
gene id G1188347
gene name LOC106601778
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55013868 ~ 55016506 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1355307
aagtttattcacccactgggtcacaCAGCTGCAAAGACAAGGCATGATTACACAAGCAGATATATTTATTACCTTCTAATATGTGGGATCATGTCCTTACACATCTAGACAGCCAATACATCGCTGTTGCTAGGCAGAAACGTAATTGGTTCTTCTCACTGGTGTAGTTATAGCACTGCCTGATACTAAAACCTTCATGCATGGAAGtatatgtgtgaaataggacTGCAGTAGGAGAGTCATTGTGGTGGGTCTCTCTGGCCTGCCTCCGAGGTTTCTTATCACTTCATTTGTTGACTTGACCTCGAGATGCATTCCTCGCCCCTCCCTAGTTcctcagctggcctgccttatcagagactaactaTTGCCCTTCGACTCCCTCCTTAGAAACATGGAGCAGAATATGAACTTTCTACACTGTAACTTTCCACAAGTCCCTATCTACCCTTCCTTGACCCCAGCATATGCATTCCTTATACATGTAAATTAATCAATGAGTTCTAGAATGGCAACATGAATTAGTATATTTCAAACTAGAATCCAACTATACTGAATTCCATAATTTGCATATCATAGAAACGTTTTTAACTTGGGAACTCCCGTTACACCCAAACATCTATGCACGTGCGCTATCGTACATAAAtgtatttcaaaatgtattttgcgacgctcgcgcACGTGACGCGTCCGGTCTAGCCAGCATGTTAGATTACACAATCTGGATTTACTCTGTGTTGTCTGAGTTTGTTTGCTATTTCTACCACCGGAAAACACAAATATGACGTTTAATGTCATCAAGGATCTCCTTATACTCTTGGGTATCCCGGTCCAGGTACATCTCTCTTTTCACCCATGCAATGAGCTGTTCTGCTTGATTCTTGTTGATTATCCCCTTCTTGTGGTATGCTTCGACCAGCTCAATGTAGCCATATCTGTAGTACTGCCTTGTTCCTTCATCAGACATGTCAATGTTACCATCGGTATATGGTGCGGCCAATCCTAGAATAAGTACATACCTGCGTCTTCTCTGAGCTGCCAGGAAGATATAGGATGACCCATGATAAAAGCCTTCCTCAGCATAAGTGCAGCATCTCCGTCTACGATTGTCTCTGCCAGCAGACGACTAGAACAGAGAAAACATGACAACGGAAAAGGTGATGACCACACCTATGTTTTGATGGCTGAGAATAACTACGGTGCCATGTACGACGTCACACATCATCCTCATGGTGGCCATTTTGCTATTCTGCCTTAACTGGACAATGTATTTTCCTTGATATCTGCTAAACCATACACGATAACACAGAAAAGGTGTTGCCTACTCTAAAGCATTCACCTGGATACTTGAGATTCCCTGCTGTTTCCAGTAGTCAGAGCATCTCTGTGATCCTGGTAAAGAACCCTCATGGTTAACAGGTTCTGTCCAGTTGGGTCATAATCAAGGCTCATGATCATCTCATGAAGCCTTGGATTCACTTGTAGGAGACGATCCAGTCGTTCATGGTTTCGGGCTATCCTCAGAGAAGCCAATGGTGGAATATGGTCTGCCTCTGCCATGCGAAAGTTACCCGGACCAAACTGAGATGGTCTACCTTTTTTAACACTTATGAGGATAGAACAGGAAGTATCAGTGGGCTAACATCATTCTTGTGTCAATTCAAAATGAATTATACAATGTAATAGGAATTATATCATGAAAATAATGGCCTAGGGTAGGCCTATCCATGCTCTTATGAATAAAAAGGCACATTGTACTCAGTAAAGAAGACTTGATAGAAATATGTAAAAAATGATAGACCTACTTTTTATAAGTATCAACCACTCCAAGGCCGTAAGCAATTATGATGGTAGTTTCATTGCTGCTCTGCTGTCCTTCTGTCGTCTTGCTGGCAGCATTTCCAGTGGGTTCATTTCCAGAAGCATTATTTGACTTTACCTTCACGGAATGTGTTATTATGGGACTTCCTGGATGATACGAAGGTTTCTTATGAATCGCCTTAATCAATATAAACCCCCCTACTGCGACTGTTCCCAATGCTACTGGAAACGCAAGGGGCCCCAAAAACGGTATCAGACCCAAGGCTGGAAGACCCATTTCAACTCTTGGTAGCCGACAATGTCTTGTAGCCCAACTCTGGTTTCTCAGCAAATGTCCTCTCTGAGCTGAGCTCTTATACTCTTGAC

Function

NR:

description
uncharacterized protein LOC110511909

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1355307 True 2187 lncRNA 0.43 2 55013868 55016506

Neighbor

gene id symbol gene type direction distance location
LOC110486846 LOC106601652 coding upstream 73377 54939020 ~ 54940491 (+)
narfl LOC106606697 coding upstream 80446 54925567 ~ 54933422 (+)
LOC110486830 LOC106606695 coding upstream 88427 54907568 ~ 54925441 (+)
LOC110485227 LOC106606653 coding upstream 203740 54755882 ~ 54810128 (+)
LOC110486811 LOC106601768 coding upstream 282503 54720661 ~ 54731365 (+)
LOC110539040 LOC106601832 coding downstream 324196 55340702 ~ 55394765 (+)
LOC110538788 bri3 coding downstream 408359 55424865 ~ 56123584 (+)
LOC110538766 LOC105013005 coding downstream 817605 55834111 ~ 55915904 (+)
LOC110485236 LOC106606588 coding downstream 1019134 56035640 ~ 56088193 (+)
LOC110486855 bri3 coding downstream 1097657 56114163 ~ 56121445 (+)
G1188343 NA non-coding upstream 11597 55000484 ~ 55002271 (+)
G1188334 NA non-coding upstream 29088 54984466 ~ 54984780 (+)
G1188331 NA non-coding upstream 31394 54982232 ~ 54982474 (+)
G1188328 NA non-coding upstream 33979 54979619 ~ 54979889 (+)
G1187645 NA non-coding upstream 178485 54833998 ~ 54835383 (+)
G1188352 LOC106606701 non-coding downstream 6917 55023423 ~ 55026525 (+)
G1188355 NA non-coding downstream 11198 55027704 ~ 55028092 (+)
G1188375 NA non-coding downstream 65709 55082215 ~ 55082736 (+)
G1188385 NA non-coding downstream 103280 55119786 ~ 55120235 (+)
G1188471 NA non-coding downstream 157000 55173506 ~ 55173710 (+)
G1188344 NA other upstream 16573 54993674 ~ 54997295 (+)
axin2 LOC105026129 other upstream 713555 54272638 ~ 54300365 (+)
G1187390 NA other upstream 748840 54264066 ~ 54265028 (+)
G1187452 NA other upstream 815853 54188567 ~ 54198015 (+)
LOC110538743 LOC106601732 other upstream 1563404 53445335 ~ 53450473 (+)
G1188386 NA other downstream 104755 55121261 ~ 55122619 (+)
G1189040 NA other downstream 921966 55938472 ~ 55939357 (+)
G1189738 NA other downstream 1819910 56836416 ~ 56836996 (+)
G1189675 srebf1 other downstream 1861422 56877928 ~ 56925607 (+)

Expression


Co-expression Network