Gene
RNA
| Item | Value |
|---|---|
| gene id | G1188352 |
| gene name | LOC106606701 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 55023423 ~ 55026525 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| methionine-R-sulfoxide reductase B1-A-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1355325 | False | 448 | lncRNA | 0.46 | 2 | 55023423 | 55025430 |
| TU1355326 | True | 519 | lncRNA | 0.47 | 3 | 55023423 | 55026525 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110486846 | LOC106601652 | coding | upstream | 82932 | 54939020 ~ 54940491 (+) |
| narfl | LOC106606697 | coding | upstream | 90001 | 54925567 ~ 54933422 (+) |
| LOC110486830 | LOC106606695 | coding | upstream | 97982 | 54907568 ~ 54925441 (+) |
| LOC110485227 | LOC106606653 | coding | upstream | 213295 | 54755882 ~ 54810128 (+) |
| LOC110486811 | LOC106601768 | coding | upstream | 292058 | 54720661 ~ 54731365 (+) |
| LOC110539040 | LOC106601832 | coding | downstream | 314177 | 55340702 ~ 55394765 (+) |
| LOC110538788 | bri3 | coding | downstream | 398340 | 55424865 ~ 56123584 (+) |
| LOC110538766 | LOC105013005 | coding | downstream | 807586 | 55834111 ~ 55915904 (+) |
| LOC110485236 | LOC106606588 | coding | downstream | 1009115 | 56035640 ~ 56088193 (+) |
| LOC110486855 | bri3 | coding | downstream | 1087638 | 56114163 ~ 56121445 (+) |
| G1188347 | LOC106601778 | non-coding | upstream | 6917 | 55013868 ~ 55016506 (+) |
| G1188343 | NA | non-coding | upstream | 21152 | 55000484 ~ 55002271 (+) |
| G1188334 | NA | non-coding | upstream | 38643 | 54984466 ~ 54984780 (+) |
| G1188331 | NA | non-coding | upstream | 40949 | 54982232 ~ 54982474 (+) |
| G1188328 | NA | non-coding | upstream | 43534 | 54979619 ~ 54979889 (+) |
| G1188355 | NA | non-coding | downstream | 1179 | 55027704 ~ 55028092 (+) |
| G1188375 | NA | non-coding | downstream | 55690 | 55082215 ~ 55082736 (+) |
| G1188385 | NA | non-coding | downstream | 93261 | 55119786 ~ 55120235 (+) |
| G1188471 | NA | non-coding | downstream | 146981 | 55173506 ~ 55173710 (+) |
| G1188472 | NA | non-coding | downstream | 147756 | 55174281 ~ 55174523 (+) |
| G1188344 | NA | other | upstream | 26128 | 54993674 ~ 54997295 (+) |
| axin2 | LOC105026129 | other | upstream | 723110 | 54272638 ~ 54300365 (+) |
| G1187390 | NA | other | upstream | 758395 | 54264066 ~ 54265028 (+) |
| G1187452 | NA | other | upstream | 825408 | 54188567 ~ 54198015 (+) |
| LOC110538743 | LOC106601732 | other | upstream | 1572959 | 53445335 ~ 53450473 (+) |
| G1188386 | NA | other | downstream | 94736 | 55121261 ~ 55122619 (+) |
| G1189040 | NA | other | downstream | 911947 | 55938472 ~ 55939357 (+) |
| G1189738 | NA | other | downstream | 1809891 | 56836416 ~ 56836996 (+) |
| G1189675 | srebf1 | other | downstream | 1851403 | 56877928 ~ 56925607 (+) |
