G1188632


Basic Information

Item Value
gene id G1188632
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55205846 ~ 55207198 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1355678
cctttgcattgtgggaaatgtagtattggtgcgtgtaaaagatctgcgggctgccggcttgctgcgggccggttctaataataaatcaagatcatcccaggggccgtaaaaaaccttcttgcgggccggatgtggcccgcgggccttgactctgacatatgtgctttAGAtcaatgatagttttaaccatgttttgaggatatacagtgtttgtttacaattacattgtggagtaaaaaaaagcttatattttgggttctgatgtggTATGACAGTTGAACCAAGCTAATGAGGCATTTCAATGGGAATTAATCAAAATAATAACGGATGTCGCTatggcagattgcccctttaagcagAGATATATTTGACATATTGACCTTTTATTCCTTTCTCTCAGCCAGAAACCCCACAGCTTCATCTCTAACCCACCATGACACACTTTCCCTTCTATTTCATTCAGAAAGCTGTTCTAAATTGAGAGACAAATGTTTTCTAAATGCTCCATAGACAAGGCGTCTTGGAGGTCATGGCTTCTGTGAGAAGAAGCCGTAATGGATGCAGAACACTGATcgacatcccaaatggcaccctattcccaatatagtgcactatgtttgtCCAGAGCCCaattggtgccatttgggaaacagcaCACTGAGCTCACAAATCATTTCTAGCTCTGCTCCCCTCAGAGCCAATGTTCAccggcagacagacagccagcttAAAGTAGtaggctgtgtctctgtctgcctgcagTGGACCCTGGCAGCAGAACACACCGCTCTACTTTTAACCCTCTAGCTGCtgtagcaccctattctctttatagtgcattcaatttgaccagggtccatggccaaaagtagtccactatatagggaatagagtgcaatttGGTACGCAGCCTCAGTCTGCAGTGAACCCAGGCAGCAGCACGCATGTCTCTGTACCTTTAcaactaaaagggttctttgtttGTCCCCATagataacactttttggttcaaggtagaaccctttggaGTGAAAGAGGTTTTACTAAGAACTTGTCAGTGGTGAAAATGTTCCACATAGAACCTTAGTGGAAAGATATTAGTGGAAGGGTTCtcctatggggacaacagATTAACCTTTTCTGGTTCTAGGTAGCACCTAATTTTCTTAAAGTGTACCCTGTCAGCCTCCAACACATCATCCCTGTCATACACACAAGTGTTTGGTTTTTCTAAAAGAATGATAAAACCAAGCTTCAGTTCTTCAGGTGTTTATGATCAAACTCCCCCACTTGATTACAACTTAATAAAATAGAGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1355678 True 1317 lncRNA 0.43 2 55205846 55207198

Neighbor

gene id symbol gene type direction distance location
LOC110514491 LOC106606702 coding downstream 46657 55029537 ~ 55159189 (-)
LOC110486836 LOC106606701 coding downstream 179381 55022619 ~ 55026465 (-)
LOC110486834 LOC106601778 coding downstream 189318 55013855 ~ 55016528 (-)
LOC118938330 LOC106601777 coding downstream 194552 55003960 ~ 55011294 (-)
LOC110485232 LOC106606700 coding downstream 230039 54946361 ~ 54975807 (-)
LOC110516592 LOC106601772 coding upstream 2416 55209614 ~ 55242150 (-)
LOC110486847 LOC106606650 coding upstream 47499 55254697 ~ 55276671 (-)
aimp2 aimp2 coding upstream 81952 55289150 ~ 55293431 (-)
LOC110486849 LOC106601824 coding upstream 105092 55312290 ~ 55316734 (-)
pvalb1 pvalb1 coding upstream 114401 55321599 ~ 55324310 (-)
G1188490 NA non-coding downstream 5495 55199094 ~ 55200351 (-)
G1188474 NA non-coding downstream 29579 55176030 ~ 55176267 (-)
G1188469 NA non-coding downstream 35430 55170114 ~ 55170416 (-)
G1188467 NA non-coding downstream 36799 55168808 ~ 55169047 (-)
G1188461 NA non-coding downstream 40792 55164746 ~ 55165054 (-)
G1188638 NA non-coding upstream 36347 55243545 ~ 55254482 (-)
G1188669 NA non-coding upstream 77248 55284446 ~ 55288214 (-)
G1188675 NA non-coding upstream 97439 55304637 ~ 55304886 (-)
G1188693 NA non-coding upstream 119875 55327073 ~ 55327354 (-)
LOC110485228 LOC106606689 other downstream 374524 54813122 ~ 54831352 (-)
LOC110486825 LOC106606691 other downstream 457188 54741479 ~ 54748709 (-)
G1188186 LOC106588841 other downstream 605397 54599401 ~ 54600449 (-)
G1188127 LOC106601757 other downstream 735008 54409911 ~ 54470838 (-)
LOC110485238 LOC106601829 other upstream 227618 55434816 ~ 55509918 (-)
G1189279 LOC106601786 other upstream 705026 55912224 ~ 55915885 (-)
LOC110485237 LOC106606659 other upstream 900746 56088292 ~ 56110984 (-)
G1189660 LOC106601786 other upstream 1463095 56670293 ~ 56674238 (-)

Expression


Co-expression Network