G1188638


Basic Information

Item Value
gene id G1188638
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55243545 ~ 55254482 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1355688
catcaagaatggtccaccagccaggcaacttgacaactgtgggaagcattggagtcaacatgggccagcatccctgtggaacgctttcgacaccttatagagtccaagccctgacgaattgaggctgttcaaaAGGACAAAAGGGGGTGGAACTTGATATTAGGAAGGTATTACTAATATTTGGTACACTTAGTGTATGTTTCATTCTTTTTTAAATTGATACTGGATTGATGACATTTCATCCATAACTGCTAAGTCTAACCAGCTGTCTTAAAACGTATCTCTGATACCCTTCATCCTATAGCAATCTCAATTCATCCCCATCTCATCTCATGACATCTCTGTGTTGAAGTTCATTCCTACTGCTCAGTCCCCATAGAGTCCAGTCCAATATGGCCGACCTGATGATGTCAGTGGAACACCTATGGACATTCTGCAATCTTTATTTATTTCTATGTCAGTCCCCTTCCTTCAGTGTTCTAATCAAAAACCCTACTGAGATTTGACAAAGAGCAGTTAACAAAAGCCGACTCGCCCAGGAATTGAGAGAGCACAGGACGTCTTTCAGCTTTTCAACAGCCAGGCAGCTGGTTGGATAAGGATCGAGGATCGACAGAGAATGAATTGGCTGAAaggctacctgtctgtctgtctgtctgtctgtctgtctgtctgtctgcctacctgtctttctgctctctgtctgGGTAGATGTTTTCTAGATCTCCACCATCCAGTGCAGAACAGAGAAGTCAATCTGAAGGTTGGGAGAAATCCACATCTGTAACCTGGAGCTCCAGTCATCCATGGCATCATTGTCCTCCAAACTTCTCTTCCATTTTGGTTTCTCAGGAAATATTCCATTATAGTTTCTACAGTTCAACCCCTTGAGGTTTGGAGATTCAAGGATTCACTGCTTTAATGCCATTGTTGTGAGGAAGAGAACTGGACTATGGGGGATTTCAAAGTGGATGTTTGTCCCTGAGGGGCCACCATAAACAGGAAATGCTGATATCATTGTGGGACCATTGAGAGTAGTTCTAACTCTGTTCTTACTCATCTGTTACAGTTGGAAACAGACGTGTGGTGGTTTGAAATGTGAAAATGTATATACAAAAGTCAAGCCAACACAAACCATGTATAGAGAGAGTATTGCTGAATTGACATCACATCTTTTAATAGAATAATATATCAAACAAGATGTGATGACGGAAAAATACTTTGATAGTTTGTTGCATTTGTCATGCTTGGAGGTGGATACCATTGTTCCTGTCTGGGATACCATTTAATACGCTGAAAACACATTCCTGTTTTTTCTGTAGAGTGATGAAcgtagagggagaggaacacatattTTCTATGACTCTGTGTTCAACAGCTTTAATGTGCTTTCAATGTTCTAAACAGGACTACTATTGAGCCTTCCTGTAAaaacaataaaacacacacacacacacacacacacacacacacacc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1355688 True 1476 lncRNA 0.42 4 55243545 55254482

Neighbor

gene id symbol gene type direction distance location
LOC110516592 LOC106601772 coding downstream 1395 55209614 ~ 55242150 (-)
LOC110514491 LOC106606702 coding downstream 84356 55029537 ~ 55159189 (-)
LOC110486836 LOC106606701 coding downstream 217080 55022619 ~ 55026465 (-)
LOC110486834 LOC106601778 coding downstream 227017 55013855 ~ 55016528 (-)
LOC118938330 LOC106601777 coding downstream 232251 55003960 ~ 55011294 (-)
LOC110486847 LOC106606650 coding upstream 215 55254697 ~ 55276671 (-)
aimp2 aimp2 coding upstream 34668 55289150 ~ 55293431 (-)
LOC110486849 LOC106601824 coding upstream 57808 55312290 ~ 55316734 (-)
pvalb1 pvalb1 coding upstream 67117 55321599 ~ 55324310 (-)
LOC118936431 LOC106601789 coding upstream 79977 55334459 ~ 55341851 (-)
G1188632 NA non-coding downstream 36347 55205846 ~ 55207198 (-)
G1188490 NA non-coding downstream 43194 55199094 ~ 55200351 (-)
G1188474 NA non-coding downstream 67278 55176030 ~ 55176267 (-)
G1188469 NA non-coding downstream 73129 55170114 ~ 55170416 (-)
G1188669 NA non-coding upstream 29964 55284446 ~ 55288214 (-)
G1188675 NA non-coding upstream 50155 55304637 ~ 55304886 (-)
G1188693 NA non-coding upstream 72591 55327073 ~ 55327354 (-)
G1188696 NA non-coding upstream 85291 55339773 ~ 55340366 (-)
G1188717 NA non-coding upstream 117717 55372199 ~ 55372529 (-)
LOC110485228 LOC106606689 other downstream 412223 54813122 ~ 54831352 (-)
LOC110486825 LOC106606691 other downstream 494887 54741479 ~ 54748709 (-)
G1188186 LOC106588841 other downstream 643096 54599401 ~ 54600449 (-)
LOC110485238 LOC106601829 other upstream 180334 55434816 ~ 55509918 (-)
G1189279 LOC106601786 other upstream 657742 55912224 ~ 55915885 (-)
LOC110485237 LOC106606659 other upstream 853462 56088292 ~ 56110984 (-)
G1189660 LOC106601786 other upstream 1415811 56670293 ~ 56674238 (-)
LOC110486894 LOC106601810 other upstream 1826335 57054453 ~ 57085521 (-)

Expression


Co-expression Network