XLOC_030859


Basic Information

Item Value
gene id XLOC_030859
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 10215514 ~ 10217606 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061938
CGGATCTAAAATCTTTGCttttgagttgaaaagttttgcgaGTTGAAAACTGCAGCTCAGTGGGCGGGATCTTATGAAACACCTTATTCTATTGGTCATCTTGATTGAGGTCACAGGTTGGCCACGCCCATTACATTTTCGCGCGGTTGGAATTGCCTTCCTGACAGGAGCGAGCTAATGGCTAGCAACAGGTCTTCTTTAAGTTTATTCTTACAGGTTGATCACTCAGTCTTATGGGGCGTAAAACATCTGCTTTGACTCCTCGGATGTCCAAATCTGCACTGACTCCACAGACGTTTACATCTGCACTGTCTTAAATCAACGAATCAATATCTACAATCTACAATGATTCCACTGGCGTCCACATCTGCATTATCTCCTTAGACATCAACATTTGGACTGACTGACCACAGACATTTATTATTCACTAAACTTATCAATCACCACCTGTgctgtgtttaatttttttctggaATTGTGTAGGATTTGGAAAATAGTAGATTTTGACTttttataaatgattataaatatgatttttttatacatttattgtttcccTTTCTGGAATAAAGGAATATAAACAGCTCTTTAGTAATCATTTAATGAGTCATACAGTTTTATGTctgtttatttt

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0048468 cell development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0009058 biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0030902 hindbrain development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061938 True 634 lncRNA 0.37 2 10215514 10217606

Neighbor

gene id symbol gene type direction distance location
XLOC_030858 chek2 coding downstream 133270 10055980 ~ 10082244 (-)
XLOC_030857 CR936408.2 coding downstream 202543 10011922 ~ 10012971 (-)
XLOC_030856 CR936408.1 coding downstream 207617 10003458 ~ 10007897 (-)
XLOC_030855 WDR31 coding downstream 213254 9983350 ~ 10002260 (-)
XLOC_030854 tor4ab coding downstream 267017 9894143 ~ 9948497 (-)
XLOC_030860 si:ch73-42k18.1 coding upstream 14587 10232193 ~ 10239079 (-)
XLOC_030861 NA coding upstream 271331 10488937 ~ 10500797 (-)
XLOC_030862 BX511089.3 coding upstream 290220 10507826 ~ 10508814 (-)
XLOC_030863 CR790366.3 coding upstream 503288 10720894 ~ 10724665 (-)
XLOC_030864 rtn4r coding upstream 548005 10765611 ~ 10946379 (-)
XLOC_030853 NA non-coding downstream 333110 9880188 ~ 9882404 (-)
XLOC_030846 AL845369.2 non-coding downstream 1036078 9173538 ~ 9179436 (-)
XLOC_030845 AL845369.1 non-coding downstream 1044980 9166395 ~ 9170534 (-)
XLOC_030844 NA non-coding downstream 1068737 9144367 ~ 9146777 (-)
XLOC_030843 NA non-coding downstream 1087955 9107085 ~ 9127559 (-)
XLOC_030865 NA non-coding upstream 750193 10967799 ~ 10971601 (-)
XLOC_030866 NA non-coding upstream 819571 11037177 ~ 11038305 (-)

Expression


Co-expression Network