XLOC_030860 (si:ch73-42k18.1)


Basic Information

Item Value
gene id XLOC_030860
gene name si:ch73-42k18.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 10232193 ~ 10239079 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060009
GGTGGAGACCGCGTGAGCGCGCATTTTCTAATGTCTGTGCTGGACACTATTACATAAAAAGCAGATTTGCACATTACAGAAAAATCAGAGCAAAGCCAACCAGGATGAGCTGGAAATGATTTTCTGAAAGCTTCATTGTGGACAAGTTTTGTAGATTTTGCATGGCATCCAGGACTGATGCACAACACAAAGAGATGGCCTCTCAAGAAATCATGATTTTGCGCGTTATTCTCACAGAAGCTGATATCAGAAAAGTCACACTGACTTCAAAGCCATGTTCAGTTGAAGATTTGATCAACTGTCTCAGAAACACTCTTGGACTGAACTATAATTTTACATTGCAGTTTCGAGATCCTTTCTTTGATCATGAATTTTGCAATGTAACTGCTTTGGAAGAGCTCCCTGAGAAGCCAACAGTAAAAATTATCCCAGTGCTTGAATTGGTGTCAGTGGCAgaagatgaaatgcagtcatcAAGTGAAATATCGAGTAATGCTCCAAGTACTGCAGATACAGTACTGATTTCTGAATCAccccagaaaaagaaaatgccaTGGCCTGATATCTTCTTGATTCCGAAATTTTCGGTCGACGTTGAATTCAGGCTGCGTCAGGCCAATTTAATCTACTTGAAGGATGGAACGCatctaaaaatgacaaaagaactGAAACATGACATTCTTCAGAAACTTGCTGAAACCATATACTCCTTCAAAGCATACCCATCTGCTGACGATTTAAAAGGTGTTGCAAAGGCATTGGTGAATACCCACCCCTGCCTTCAAGAACCAGGATCGCCTTCTGGACACTGTGGGTGGACAAACAGTTTGAAAGACAAAATGGGAAATTACAGATCCAAAATGAGAAGCCTTGGGCACACAGATGTCACAGTTAATGCAGGAAAAAGAGGAAGATACTCTACTAGCAGTGATCCACctaacaagaacataaaaaaaccAAGGAAAGGAGAGGTCAACTATCTACCTAACCTTCCAAGTGGTCATGATACTTCCAGTCTTGAGTTGCTCAGACAGCAGTTGGCAGAtgaaacgaagaaaaaaaaacctgatgcTACCTTCATTAATCAGAATATGGATGTGACTCTGTCTTTAAGAAGACAGGAAGTTGTGATCAACAAGCCTCCTGTAAGCCAGATACTTCAGCGTTGGCCAGCACTTTTCACTGAAAGTCAGGTGTATCAAGAATTCAACCGAATAGTTGGGAAGAATCTGAAGCAAGAATTCTATGGGTCTCTTGATCATCACTGCCCACAGCTGATTCAGATCTTCAGGTCAAAGAGAGGTCTCACTGGACAGATTTTAAGCAGTCTTCTGCTAGATGCCAAGGCCTCTGACCTCAGTGACATGCGATGTGTTGTCGTTCGAGGGCTTCCAGTACTTCTTGGTGATGACCCATCTGAGTTTTTCAAATCATGTTTTGCTTCTGATGATGGAGACTCATACCAACATGTGCCCGTTGGAATCCTTAACCGGGAAAATGAAGATGCTCTGCAACCCCTGTCCTTCCGCCTCCACCCATCCTCAGTGGGAATCATCTTGGAAGGGAATGTTGTAATGGACAATATAGACAACATACCCCAGGCCATGTGTCTTCTTTTTGGTTTAACTTATGCACTGCACCTAGACTACCCAAAGTGCATGGGCAATACCCTTCTTTTCATTCAACAAGTTCTGCTGGGTTTGGGTAAGAAGGAGCTGAAGGGTAAGATTCTGGCTGTCAAAAATCAACTTGCCATGTAAACAGGTACAGAAAAGTCATGTTCCTTCAGGCTTGCTGTTCTGCTGTAACTGTGATGGAAAAGTGTAAAACTTTGCCTTAGTGTTTGGCAAGTGTTAATGTTCTATAATGATACGGTGTAATGTAGgattgtcacaatactggaattcgataccaattggtactgaaatttaaaaaatgttcattccCGCTTACATTCAAGTGCTGTTGAGCGTGttgttaaacagcactgatttgccattgtgttcacatgctcaacagaaatgactgtgaaggTGTTCGGTTCACCTAACTCACCACTTTTTATTGAGCGTAAACCCAGATACAGGGATACTGGAGTGTTTAAAGTCAAGTTAATCAGCTGTCTATAAGCTGacaagcgatccgctgatgaattatggctttaaaacgctcatgggtccctgtatctgtgtttacactcagtaaacagcagtaagTTCAGTGATCCGATGACCACAGCcattcacagtcatttctgtggagcacgtaaacacaatggcaaatcagtacTGCTTAAGAATGTGcttaacagtgctcaaatgttagcgggaaatagactttttttttttttaacttcagtaccgattggtattgAATTCCAGTATTGTAAAAACCCTTGATATACTGTggttgtttaatatttaaatatgtttgtaaaaacagtttaaaaggttttaaataattgttttaatacgATTTATAGTAATAAATGAGTAATTGTTATACAAGGCATTTTCTTGTTTTGTCACTTGTTTTTAAAAGTGATATTTCTAAGTGATTTCAAATAAATTGTAAAGTA
>TCONS_00060010
ATGGCATCCAGGACTGATGCACAACACAAAGAGATGGCCTCTCAAGAAATCATGATTTTGCGCGTTATTCTCACAGAAGCTGATATCAGAAAAGTCACACTGACTTCAAAGCCATGTTCAGTTGAAGATTTGATCAACTGTCTCAGAAACACTCTTGGACTGAACTATAATTTTACATTGCAGTTTCGAGATCCTTTCTTTGATCATGAATTTTGCAATGTAACTGCTTTGGAAGAGCTCCCTGAGAAGCCAACAGTAAAAATTATCCCAGTGCTTGAATTGGTGTCAGTGGCAgaagatgaaatgcagtcatcAAGTGAAATATCGAGTAATGCTCCAAGTACTGCAGATACAGTACTGATTTCTGAATCAccccagaaaaagaaaatgccaTGGCCTGATATCTTCTTGATTCCGAAATTTTCGGTCGACGTTGAATTCAGGCTGCGTCAGGCCAATTTAATCTACTTGAAGGATGGAACGCatctaaaaatgacaaaagaactGAAACATGACATTCTTCAGAAACTTGCTGAAACCATATACTCCTTCAAAGCATACCCATCTGCTGACGATTTAAAAGGTGTTGCAAAGGCATTGGTGAATACCCACCCCTGCCTTCAAGAACCAGGATCGCCTTCTGGACACTGTGGGTGGACAAACAGTTTGAAAGACAAAATGGGAAATTACAGATCCAAAATGAGAAGCCTTGGGCACACAGATGTCACAGTTAATGCAGGAAAAAGAGGAAGATACTCTACTAGCAGTGATCCACctaacaagaacataaaaaaaccAAGGAAAGGAGAGGTCAACTATCTACCTAACCTTCCAAGTGGTCATGATACTTCCAGTCTTGAGTTGCTCAGACAGCAGTTGGCAGAtgaaacgaagaaaaaaaaacctgatgcTACCTTCATTAATCAGAATATGGATGTGACTCTGTCTTTAAGAAGACAGGAAGTTGTGATCAACAAGCCTCCTGTAAGCCAGATACTTCAGCGTTGGCCAGCACTTTTCACTGAAAGTCAGGTGTATCAAGAATTCAACCGAATAGTTGGGAAGAATCTGAAGCAAGAATTCTATGGGTCTCTTGATCATCACTGCCCACAGCTGATTCAGATCTTCAGGTCAAAGAGAGGTCTCACTGGACAGATTTTAAGCAGTCTTCTGCTAGATGCCAAGGCCTCTGACCTCAGTGACATGCGATGTGTTGTCGTTCGAGGGCTTCCAGTACTTCTTGGTGATGACCCATCTGAGTTTTTCAAATCATGTTTTGCTTCTGATGATGGAGACTCATACCAACATGTGCCCGTTGGAATCCTTAACCGGGAAAATGAAGATGCTCTGCAACCCCTGTCCTTCCGCCTCCACCCATCCTCAGTGGGAATCATCTTGGAAGGGAATGTTGTAATGGACAATATAGACAACATACCCCAGGCCATGTGTCTTCTTTTTGGTTTAACTTATGCACTGCACCTAGACTACCCAAAGTGCATGGGCAATACCCTTCTTTTCATTCAACAAGTTCTGCTGGGTTTGGGTAAGAAGGAGCTGAAGGGTAAGATTCTGGCTGTCAAAAATCAACTTGCCATGTAA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-141215-12 No description available

Ensembl:

ensembl_id ENSDARG00000068915

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060009 False 2578 mRNA 0.40 7 10232193 10239079
TCONS_00060010 True 1599 mRNA 0.43 5 10233011 10236599

Neighbor

gene id symbol gene type direction distance location
XLOC_030859 NA coding downstream 14587 10215514 ~ 10217606 (-)
XLOC_030858 chek2 coding downstream 149949 10055980 ~ 10082244 (-)
XLOC_030857 CR936408.2 coding downstream 219222 10011922 ~ 10012971 (-)
XLOC_030856 CR936408.1 coding downstream 224296 10003458 ~ 10007897 (-)
XLOC_030855 WDR31 coding downstream 229933 9983350 ~ 10002260 (-)
XLOC_030861 NA coding upstream 249858 10488937 ~ 10500797 (-)
XLOC_030862 BX511089.3 coding upstream 268747 10507826 ~ 10508814 (-)
XLOC_030863 CR790366.3 coding upstream 481815 10720894 ~ 10724665 (-)
XLOC_030864 rtn4r coding upstream 526532 10765611 ~ 10946379 (-)
XLOC_030865 NA coding upstream 728720 10967799 ~ 10971601 (-)
XLOC_030853 NA non-coding downstream 349789 9880188 ~ 9882404 (-)
XLOC_030846 AL845369.2 non-coding downstream 1052757 9173538 ~ 9179436 (-)
XLOC_030845 AL845369.1 non-coding downstream 1061659 9166395 ~ 9170534 (-)
XLOC_030844 NA non-coding downstream 1085416 9144367 ~ 9146777 (-)
XLOC_030866 NA non-coding upstream 798098 11037177 ~ 11038305 (-)

Expression


Co-expression Network