XLOC_030861


Basic Information

Item Value
gene id XLOC_030861
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 10488937 ~ 10500797 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060011
ATGTTCCGTTGCCTCGGCGCCAAAGCCCAAAGGAAGTTTTACAGAATCCAGTCAGATTGAAGCAAGACGCCAGAGCCGGAGTTTTGTACATCCATTTGCACAGTACTGTACAACAAGTTTCCTTTGCTGAGTTCCTTGGTCAGGGGTTAAACACATTTTCTGTCCAGTACTGCAGTTGGAATTTTCCATCAacatttttatggtggcgcagtgggaagtgctctcacctcacagcaagaagatcgctagtTCGATTCTCGACTggatctgttggcatttctgtgtggagtctgcatgttctcccagcgttcgcatgggtttcctccgggtgctccggtttcccccacaagtccaaagacatgcggtataggggaattggaCAACCGATGTCCATGTCAAAAGAGCGTCTATTCTTTAAGCTCTCTTTACTTACCTTGGTGAGGATGAGGCATGCCTGGTGAAAGAATACATGagCAACCAAAAAGAAGAATTTTTGAAGGACCTGACAAACACCACCATGGCCATATGTGTCATCAAAAAGGAAAGAGGAGATTATGAGGACATTGGCATCGTTGTGGATGGAACAGTGATTATTGAACAGATAAAATCTGTTGCACAAGCCTGTGCACTGATGTTGGGGGCAATTTATGTGCTTGATTTGGCCtacccaaaagaactcaaatacTATTTGGAGTTTGCCCAAAAAGTACTTGTGCAAATGAACTCTGACAAGCTCTCCTCAAAGGTTCTCATACTGGAAAACAGTGTGATACTGTAATTTTAAGCATTGAAGTGTTGATAAATGCTCAACAACCAAATGTATATCATATACAAATTGCAGTTTAGTGTAGGAATTGTTTAATAAGTGAATTCAGTTTTCTTTGTGTGCAAAATTAATTAGCTGTAGGAACTTGTtttaaatggtgtgtgtgtgtgtgcgcgtgtgtgtgtgtgtgcgtgcgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagcatgtgcaTTCTATAAACTGTATTTATTCCATTTCATACAACTTGTACTTGCTCAATATGTTGagttaattttttaagttaattagtTGATTATTTTGTGTATTGGGGTGTGTGTATCATAAGTATTGCAGTTTGCTCTAAGACTTCATATAGTTTTCTTTTATGTgttggtttaaattaaatgtgctgtacaaactgtttattgttttatggtGTGCTGCTAAAGCATTTATAGGCAgtgatttatgttttgttaaaaaatgcatcttaaaaagtcattaaaatgaattcaaaacaAA
>TCONS_00061521
ttaactaatcaaatttgtattatttacagaCAACCGATGTCCATGTCAAAAGAGCGTCTATTCTTTAAGCTCTCTTTACTTACCTTGGTGAGGATGAGGCATGCCTGGTGAAAGAATACATGagCAACCAAAAAGAAGAATTTTTGAAGGACCTGACAAACACCACCATGGCCATATGTGTCATCAAAAAGGAAAGAGGAGATTATGAGGACATTGGCATCGTTGTGGATGGAACAGTGATTATTGAACAGATAAAATCTGTTGCACAAGCCTGTGCACTGATGTTGGGGGCAATTTATGTGCTTGATTTGGCCtacccaaaagaactcaaatacTATTTGGAGTTTGCCCAAAAAGTACTTGTGCAAATGAACTCTGACAAGCTCTCCTCAAAGGTTCTCATACTGGAAAACAGTGTGATACTGTAATTTTAAGCATTGAAGTGTTGATAAATGCTCAACAACCAAATGTATATCATATACAAATTGCAGTTTAGTGTAGGAATTGTTTAATAAGTGAATTCAGTTTTCTTTGTGTGCAAAATTAATTAGCTGTAGGAACTTGTtttaaatggtgtgtgtgtgtgtgcgcgtgtgtgtgtgtgtgcgtgcgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagcatgtgcaTTCTATAAACTGTATTTATTCCATTTCATACAACTTGTACTTGCTCAATATGTTGagttaattttttaagttaattagtTGATTATTTTGTGTATTGGGGTGTGTGTATCATAAGTATTGCAGTTTGCTCTAAGACTTCATATAGTTTTCTTTTATGTgttggtttaaattaaatgtgctgtacaaactgtttattgttttatggtGTGCTGCTAAAGCATTTATAGGCAgtga
>TCONS_00061939
attaaattatttttaatcggTTTTAAGTGAATTAGATGTGTTTTAAAccaatctaaattaattaattaaagtctaTTAGAAAAAATTATGTTAGCTTTGTGCGCATGCGCATTATGTTCCGTTGCCTCGGCGCCAAAGCCCAAAGGAAGTTTTACAGAATCCAGTCAGATTGAAGCAAGACGCCAGAGCCGGAGTTTTGTACATCCATTTGCACAGTAAGTCACATTTTATATTGTACCAGActgtttattacataaaaaacTTTGTGGGTAACATAGACGCATAAAATGGTCTCTCGTTCGGACTGTCTATTTTGGTCGTTTTTAAATTTCACGGCGACCAGCCGTCGAGCGCGCTCGCAAGTTAAGCTAACAGTTAACGTTACACACGGTTTGACAAATCTCGCTTTTATGTCGCAGAATATATTAAAGATTCTTTTTAGCAAGAATGTAGTCATGTAGACTTGAGGCTATTTGTAGGCTATTTTCAAGAGAATAAGCATTTTCTTTGGTGTGACGACAGTGTCCGTGATCCGCCATTCCAAACGAAAAAAGCTTCGTTGCTAACGTTAGCTCAGTCCTTTGTGAATTTACCGTGGCTTTTACTATGGTTAACATTAAACATGCGTTTAGATAGTTGTGAACGGACAGTACCATACTGATTTTGTTATAGAACGATTTGGTCTGGCGTTAGGGCACTACTGACTGTCTTAGGAGGTTGTCGAATGTGTGCCCATACTGGCGTAACATTAACTTTTAACGTAAAGGGCGTCCATTTAtacagttctttattttttttttacgtgagATGCTGTAATTATGTCTTTGGGTTATAATGCTCTTAATGGGCTAACTTATATTCACAGCAAGTGTTTATCAGCCACCGATAAACGTCCAGCGCAAGGTTaacttaatgtgactttttccatATTCATAAAGTGCCTTTTACATCAACGATAAtgtaatttaacaaaaataatattctttAAATAAGCTGAAGCAATCCTTTAGTTGTTCAAACGTAAAACACATGCAGACGAGTGCTAAAACTTCATGGAAAATATTGTGGTTAAAATAAATTgacatatttttaagacatggcGTTGaagaatggaatttaatgcagtgctttgactggtctgagacccactttatatcgtatcaatcaggcagtgacgattatcttaatcatattaatcaCGTTCAGCAATTTGTTCAATAAGTAATTTATCTTAATGTTTCCTAATATAATTAATCGGTAAACAATATGTTGATTAAGAAGTTGGTCATGTTGTAACTTGTGCTGAATTTTGAACCTAAATGATAATCATGTGCTTCCTTTCATTTGAGGTACTGTACAACAAGTTTCCTTTGCTGAGTTCCTTGGTCAGGGGTTAAACACATTTTCTGTCCAGTACTGCAGTTGGAATTTTCCATCAacatttttatggtaagtaactgCAAAACATTTATTACTACACATTACAGTAAATAGTTTCTTAACTGAATATGTTGCTCTGAAAAATCTAAATAGTCCCAAAAAaggaaatttactcactattcactCACCATGTTTccatggttccaaacctttgagtttcttttatctgttgaacacaagacaaaatattttgaagagtgttagaaaccagtaatcattgacattcatagtaggaaaaacatattatggaagtcaatggttaccggttttcatcatttttcaaatgatcttatgttgtgtttatcagaacaaagaaactcaaacaggtttgtgacaagtgaagaatAACTAAATGTTATTGTTGCTTCCCTAGTTTTCACAGTACTAGGGTGCAGTAAGAGCACAAACACAGAGTTCAACTTTGATTCAACTCCGTGATTCTCTCAAGAGAGCCGACCAAAATGTTTGACCTGCCATAAAATGATTCGACTATCTGCCGACCAAGAGAGGTTATTCACCTTTTTTTTCCTCCTGTACATTGCATCAACACAGCACAGCAAATATCAAAGttgaaatttaatttgattcaaagaAGAGTCGCATCAGAATTTGGCTCAAAATTGCACAATGCACATTCGGCCTTAAGCCTGGTttgtacttctgcgttgagtgattggcgtgacctaCGGCGCCTGCCCTGCGTGCAGCTGAGCACTTATACTTgtgcgcgctgtttgtgttgttctACAATAACACTTACAAAAGCAGTAGGTTTATATGTTCTCTCTGTATGGAGTTTCTTCGCttgggttttgttttttctgaacactaccttaatgaACAAGAagataaaactcgctcattctgaggcGGGAGCCGGCAgtcatgcaacaactttaatcataaggtaaacacaaagcaacagttTCCACCTGGAGCTATTTCATgggactctacacttgtaaacactcgctccaatgggTTGGCGTGGCTCTCAACCCCGCCCACACACGTAAGCGCTACCAAGCCCACTAATAGAGCGTGCGCTACGtgttgttgcgatgtgtagttacatttttggagagatgCGCCACGGCAAGGGCTATTCGACTGCGCGCAGGCTGCGCCGCACCATACACGTGCATTtgatgtaaaggctgatttatacttctgcatgtcTTTATCTTGGCTGAACATGGTAAATTACAAGGTAGTcaaaaaaagaaatcactttaaatgtagtgtaactaaacaaactattcacaagtaaacagtcagttgattaaataaatttgagtatcattataaatgtaatatacatgTAAGGGACAATCGTCAGATTTAGGTGTGTTAAAGGATAAGTGCACAACATCGAGGCAaagtttaatgtttagattattactGCAAGTTgaaatttaatatagttttaatttctaaatataacattttaaaaataaatatataggctatgtTCTGAATAATGCTCATGTCTATGCTTATCATGCCACAAACATACTTATATTCTATGTATTTGACGATGCAGTCaatgcatgcactgaaaaaaatatgcttATAGGCTACCTTTACCTGCAGGTTTCGCTAGCTGGGCAAAACTTAGATAGGCTATTAATAATGGatatacattaaatatgtataattttatttgtgaaagcaagagagaaACTTGTGGGAGTGCTGTAATAAAGGAGTCTCAAATGACTAACAGTTGTACATTACGGTAACGTGTTTTATTCCGGACATGGCATATGACATAAATAATCgataacatttgagctggtttcagttattaattctttttatttttaaaaatatatttatttaacaggtggcgcagtgggaagtgctctcacctcacagcaagaagat
>TCONS_00060012
ATGTTCCGTTGCCTCGGCGCCAAAGCCCAAAGGAAGTTTTACAGAATCCAGTCAGATTGAAGCAAGACGCCAGAGCCGGAGTTTTGTACATCCATTTGCACAGTACTGTACAACAAGTTTCCTTTGCTGAGTTCCTTGGTCAGGGGTTAAACACATTTTCTGTCCAGTACTGCAGTTGGAATTTTCCATCAacatttttatggtaagtaactgCAAAACATTTATTACTACACATTACAGTAAATAGTTTCTTAACTGAATATGTTGCTCTGAAAAATCTAAATAGTCCCAAAAAaggaaatttactcactattcactCACCATGTTTccatggttccaaacctttgagtttcttttatctgt

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0001707 mesoderm formation biological_process
GO:0001708 cell fate specification biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0001756 somitogenesis biological_process
GO:0001757 somite specification biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0060914 heart formation biological_process
GO:0003401 axis elongation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0048645 animal organ formation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0007379 segment specification biological_process
GO:0003260 cardioblast migration biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050793 regulation of developmental process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0060026 convergent extension biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0003318 cell migration to the midline involved in heart development biological_process
GO:0097028 dendritic cell differentiation biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000094523

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060011 False 1331 lncRNA 0.40 5 10488937 10500684
TCONS_00061521 False 924 lncRNA 0.37 2 10488994 10495826
TCONS_00061939 False 3327 lncRNA 0.36 1 10497471 10500797
TCONS_00060012 True 363 lncRNA 0.38 2 10499188 10500684

Neighbor

gene id symbol gene type direction distance location
XLOC_030860 si:ch73-42k18.1 coding downstream 249858 10232193 ~ 10239079 (-)
XLOC_030859 NA coding downstream 271331 10215514 ~ 10217606 (-)
XLOC_030858 chek2 coding downstream 406693 10055980 ~ 10082244 (-)
XLOC_030857 CR936408.2 coding downstream 475966 10011922 ~ 10012971 (-)
XLOC_030856 CR936408.1 coding downstream 481040 10003458 ~ 10007897 (-)
XLOC_030862 BX511089.3 coding upstream 7029 10507826 ~ 10508814 (-)
XLOC_030863 CR790366.3 coding upstream 220097 10720894 ~ 10724665 (-)
XLOC_030864 rtn4r coding upstream 264814 10765611 ~ 10946379 (-)
XLOC_030865 NA coding upstream 467002 10967799 ~ 10971601 (-)
XLOC_030866 NA coding upstream 536380 11037177 ~ 11038305 (-)
XLOC_030853 NA non-coding downstream 606533 9880188 ~ 9882404 (-)
XLOC_030846 AL845369.2 non-coding downstream 1309501 9173538 ~ 9179436 (-)
XLOC_030845 AL845369.1 non-coding downstream 1318403 9166395 ~ 9170534 (-)
XLOC_030844 NA non-coding downstream 1342160 9144367 ~ 9146777 (-)
XLOC_030868 CABZ01077121.1 non-coding upstream 777629 11278426 ~ 11283521 (-)

Expression


Co-expression Network