G1189042


Basic Information

Item Value
gene id G1189042
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55947698 ~ 55958296 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1356158
aggtgaactactgtaacagttcagtgtactgttgtgtctcaaggaggtgacctactgtaacagttcagtgtgttatagtgtctcaaggaggtgacctactgtaacagttcagtgtgttatagtgtctctaggaggtgacctactgtaacagttcagtgtgttatagtgtctgtaggaggtgaactactgtaacagttcagtgtgttatagtgtctctaggaggtgaactactgtaacagttcagtgaactgttgtgtctcaaggaggtgaactactgtaacagttcagtgtactgttgtgtctcaaggaggtgacctactgtaacagttcagtgtgttatagtgtctcaaggaggtgaactactgtaacagttcagtgtgtcatattgtctctctctaggaggtgaactactgtaattgttcagtgtgttatagtttctcttggaggtgaactactgtcaaagttcagtgtgttatagtgtctctaggatgtgaactacttcaacacttcagtgtgttattgtgtctctatttatgaggtgaactattgtaacagttcagtgtgttatactgtcaccaggaggtgaactactgtaacagttcagtgtgttgtagtgtaactaggaggtgaactactgtaacagttcagtgaacTGTTGTGTCTCCAGGAGGTAAACTACtataacagttcagtgtactgttgtgtctcaaggaggtgaactactgtaacagttcagtgtgccattgtgtctcaaggaggtgaactactgtaacagttcagtgtgtcattgtgtctcaaggaggtgaactactgtaacagttcagtgtgttattgtgtctctcactaagacatgaaatactgtatcagttccgtgtgttattgtgtctgtaggaggtgaactactgtaacagttcagtgtgttattgtgtctctaggaggtgacctactgtaacaggtcagtgtactgttgtgtctcaaggaggtgaactactgtaacagttcagtgtgttgtagtgtatctCTCTAGCAGTTATAGTGTATCTCTCtagcagttcagtgtgttatagtgtatctctctaggaggtgacctactgtaacagttcagtgtgttatagtgtcaccaggatgtgaactacttcaacacttcagtgtgttattgtgtctttatttatgaggtgaactattgtaacagttcagtgtgttatagtgtcaccaggaggttaactactgtaacagttcagtgtgttatagtgtctctaagaggtgaactactgtaacagttcagtgtactgttgtgtctcaaggagctgaactactgtaacagttcagtgcactgttgtgtctcaaggaggtgaactactgtaacagttctgtCTGTTATTGCGTCTCTCAGacgtgaactattgtaacagttcagtgtgttattgtgtctcaaggaggtgaactactgtaacagttcagtgtgttatagtgtctcaaggagttgaactactgtaacagttctgtgtgttattgtgtctctaagaggtgaactattgtaacagttcagtgtgttattgtgtctcaaggaggtgaactactgtaacagtacagtgtactgttgtgtctctaggatgtgaactactgtaacagttcagtgtgttat
>TU1356159
aggtgaactactgtaacagttcagtgtactgttgtgtctcaaggaggtgacctactgtaacagttcagtgtgttatagtgtctcaaggaggtgacctactgtaacagttcagtgtgttatagtgtctctaggaggtgacctactgtaacagttcagtgtgttatagtgtctgtaggaggtgaactactgtaacagttcagtgtgttatagtgtctctaggaggtgaactactgtaacagttcagtgaactgttgtgtctcaaggaggtgaactactgtaacagttcagtgtactgttgtgtctcaaggaggtgacctactgtaacagttcagtgtgttatagtgtctcaaggaggtgaactactgtaacagttcagtgtgtcatattgtctctctctaggaggtgaactactgtaattgttcagtgtgttatagtttctcttggaggtgaactactgtcaaagttcagtgtgttatagtgtctctaggatgtgaactacttcaacacttcagtgtgttattgtgtctctatttatgaggtgaactattgtaacagttcagtgtgttatactgtcaccaggaggtgaactactgtaacagttcagtgtgttgtagtgtaactaggaggtgaactactgtaacagttcagtgaacTGTTGTGTCTCCAGGAGGTAAACTACtataacagttcagtgtactgttgtgtctcaaggaggtgaactactgtaacagttcagtgtgccattgtgtctcaaggaggtgaactactgtaacagttcagtgtgtcattgtgtctcaaggaggtgaactactgtaacagttcagtgtgttattgtgtctctcactaagacatgaaatactgtatcagttccgtgtgttattgtgtctgtaggaggtgaactactgtaacagttcagtgtgttattgtgtctctaggaggtgacctactgtaacaggtcagtgtactgttgtgtctcaaggaggtgaactactgtaacagttcagtgtgttgtagtgtatctCTCTAGCAGTTATAGTGTATCTCTCtagcagttcagtgtgttatagtgtatctctctaggaggtgacctactgtaacagttcagtgtgttatagtgtcaccaggatgtgaactacttcaacacttcagtgtgttattgtgtctttatttatgaggtgaactattgtaacagttcagtgtgttatagtgtcaccaggaggttaactactgtaacagttcagtgtgttatagtgtctctaagaggtgaactactgtaacagttcagtgtgttatattgtctcaaggagttgaactactgtaacagttctgtgtgttattgtgtctctaagagctgaactactgcaacagttcagtgtactgttgtgtctcaaggagctgaactactgcaacagttcagtgtactgttgtgtctctaggatgtgaactactgtaacagttcagtgtgtttttgtgtctctatttaggaggtgaactattgtaacagttcagtgtgttattgtgtctcaaggaggtgaactactgtaacatttcagtgtgttatagtgtctcaaggaggtgaactactgtaacagttcagtgtgttatagtgtctctaggaggtgaactactgtaacagttcagtgtgttattgtgtctcaaggaggtgaactactgtaacagttcagtgtgttattgtgtctcaaggaggtgaactattgtaacagttcagtgtgttattgtgtctcaaggaggtgaactactgtaacagttcagtgtgttatagtgtctttaagaggtgaactactgtaacatttcagtgtgttatagtgtctcaaggaggtgaactactgtaacagttcagtgtgttattgtgtctcaaggaggtgaactactgtaacagttcagtatgttattgtgtctcaaggaggtgaactattgtaacagttcagtgtgttattgtgtctcaaggaggtgaactactgtaacagttcagtgtgttatagtgtctttaagaggtgaactattgtaacatttcagtgtgttattgtgtctcaaggaggtgaactactgtaacagttcagtgtgttatagtgtctctcactaagacgtgaaatactgtatcagttcagtgtgttatagtgtctctaggaagtgaactactgtaacagttcagtgtgtcatagtgtctctctctaggagttgAACAACtgaaacagttcagtgtgttctagtgtctctaagaggtgaactactgtaacagttcagtgaacTGTTGTGTCTCCAGGAGGTAAACTACtataacagttcagtgtactgttgtgtctcaaggaggttacctactgtaacagttttgtgtgctatagtgtctctaggaggtgaactactgtaacagttcagtgtgttatagtgtctctaagaggtgaactactgcaacagttcagtgtgtcatattgtctctctctaggaggtgaactactgtaacagttcagtatgtcattgtgtctcaaggaggtgaactactgtaacatttcagtgtgttatagtgtctctcactaagacatgaaatactgtatcagttcagtgtgttattgtgtctctaggaggtgacctactgtaacagttcagtttgttatagtgtctctaagaggtgaactactgtaacagttcagtgtgtcatattgtctctctctaggaggtgaactactgtaacagttcattgtgttatagtgtctctaagtgGTGAACTActgcaacagttcagtgtgtaatgttgtctctcactaagacgagaaatactgtatcagttcagtgtgttattgtgtctcaaggaggtgaactactgtaacagttcagtgtgtttttgtgtctctatttaggaggtgaactattgtaacagttcagtgtgttatagtgtctcaaggaggtgaactactgtaacagttcagtgtgttatagtgtctccaggagctgaactactgtaacagttcagtgtgttattgtgtctcaaggaggtgaactattgtaacagttcagtgtgttattgtgtcaccaggatgtgaactactgtaacagttcagtgtactgttgtgtctcaaggaggtgacctactgtaacagttcagtctgttatagtgtctctaagaggtgaactactgtgacagttcagtgtgttatagtgtctctcactaagacgtgaactactgtaacagttcagtgtgttattgtgtctcttacTAAgagatgaaatactgtaacagttccgtgtgttatagtgtctctaggatgtgaactactgtaacagttcagtatgtcattgtgtctcaaggaggtgaactactgtaacagttcagtgtgtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1356158 False 1645 lncRNA 0.41 3 55947698 55952898
TU1356159 True 3355 lncRNA 0.40 5 55947698 55958296
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110538766 LOC105013005 coding upstream 31794 55834111 ~ 55915904 (+)
LOC110539040 LOC106601832 coding upstream 552933 55340702 ~ 55394765 (+)
LOC110486846 LOC106601652 coding upstream 1007207 54939020 ~ 54940491 (+)
narfl LOC106606697 coding upstream 1014276 54925567 ~ 54933422 (+)
LOC110486830 LOC106606695 coding upstream 1022257 54907568 ~ 54925441 (+)
LOC110485236 LOC106606588 coding downstream 77344 56035640 ~ 56088193 (+)
LOC110486855 bri3 coding downstream 155867 56114163 ~ 56121445 (+)
LOC110538765 LOC105013005 coding downstream 638325 56596621 ~ 56674315 (+)
LOC118938096 NA coding downstream 720306 56678602 ~ 56679864 (+)
LOC118938331 LOC106606599 coding downstream 730287 56688583 ~ 56926185 (+)
G1189027 NA non-coding upstream 42741 55903795 ~ 55904957 (+)
G1188996 NA non-coding upstream 104520 55842792 ~ 55843178 (+)
G1188946 NA non-coding upstream 194122 55753287 ~ 55753576 (+)
G1188830 NA non-coding upstream 328136 55619351 ~ 55619562 (+)
G1188817 NA non-coding upstream 340145 55607303 ~ 55607553 (+)
G1189054 NA non-coding downstream 27333 55985629 ~ 56026601 (+)
G1189057 NA non-coding downstream 41140 55999436 ~ 56002971 (+)
G1189058 NA non-coding downstream 52640 56010936 ~ 56023484 (+)
G1189060 NA non-coding downstream 54768 56013064 ~ 56018050 (+)
G1189040 NA other upstream 8341 55938472 ~ 55939357 (+)
G1188386 NA other upstream 825079 55121261 ~ 55122619 (+)
G1188344 NA other upstream 950403 54993674 ~ 54997295 (+)
axin2 LOC105026129 other upstream 1647385 54272638 ~ 54300365 (+)
G1189738 NA other downstream 878120 56836416 ~ 56836996 (+)
G1189675 srebf1 other downstream 919632 56877928 ~ 56925607 (+)
G1189819 NA other downstream 1096157 57054453 ~ 57055617 (+)
LOC110514101 LOC106606600 other downstream 1637724 57522756 ~ 57640558 (+)
LOC110486909 LOC106601794 other downstream 1665377 57613961 ~ 57625405 (+)

Expression

G1189042 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
End of interactive chart.

G1189042 Expression in each Bioproject

Bar chart with 10 bars.
G1189042 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network