G1189044


Basic Information

Item Value
gene id G1189044
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55955185 ~ 56024767 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1356163
gttcagtgtgttatagtgtctctaagtggtgaactactgtaacagttcagagtgttatagtgtctctaagaggtgaactactgtaacagtttagtgtgttatagtgtctctaagaggtgaactactgtaacagtttagtgtgttatagtgtttctaagaggtgaactactgtatcagttcagtgtactgttgtgtctctatgaggtgacctactgtaacagttcagtgtgttatagtgtctctaggaggtgaactactgtaacagttcagtgtgttataatgtctctcactaagacattaaatactgtaacagttcattgtgttatagtgtctctaggaggtgaactactgtaacagttcagtgtgttatagtgtctctaggagctgaactactgtaacagttcagtgtgttataatgtctctcactaagacatgAAACACTGTAAGagttctgtgtgttattgtgtctctaggaggtgaactactgtaacagttcagtgtgttattgtgtctctaggaggtgaactactgtaacagttcagtgtactgttgtttctcaaggaggtgaactactgtaacagttcagtgtgttatagtgtctctaagaggtgatctactgtaacagttcagtgtgtcatagtgtctctaggaggttaactactgtaacagttcagtgtgttatagtgtcaccaggatgtgaactactgtaacatttcagtgtgttatagtgtctctaggaagtgaacaactgcaacagttcagtgtgtcatagtgtctctctctaggaggtgaactactgtaacatttcagtgtgttatcgTATCACCAGTTGGTGAACTACTttaaaagttcagtgtgttatagtgtctctaagaggtgaactactgtaacagttcagtttgttatagtgtctctcactaagacgtgaaatactgtaacagttccgtgtgttattgtgtctctaagaggtgaactactgtaacagtttagtgtactgttgtgtctcaaggaggacgactactgtaacagttcagtgtgttatagtgtcactagAATGTGAACT
>TU1356162
gtgttatagtgtctctaggagctgaactactgtaacagttcagtgtgttataatgtctctcactaagacatgaaacactgtaacagttccgtgtgttattgtgtctctaggaggtgaactactgtaacagttcagtgtgttattgtgtctctaggaggtgaactactgtaacagttcagtgtactgttgtttctcaaggaggtgaactactgtaacagttcagtgtactgttgtttctctaggaggtgaactactgtaacagttcagtgtgttatagtgtctctaggaggtgaactactgtaacagttcagtgtgtcatagtgtctctcactaagccatgaaatactgtaacagttctgtgtgttattgtgtctcaaggaggtgaattgctgtaacagttcagtgtgttatagtgtcgaccaggatgtgaactcctgtaacagttcagtgtgttatagtttctctaggaggtgaactactgtaacagttcagtgtgttatagtgtctctcactaagacgtgaaatactgtatcagttcagtgtgttatagtgtctctaggagttgaactactgtaacagctcagtatgttatagtgtctcaaggaggtgaactactgtaacagctcagtgtgttatagtgtctcaaggaggtgaactactgtaacagttcagtgtgttatagtgtctctaggaggtgaactagtGTAACAGTTCAGtctgttatagtgtctctctctaggaggtgaactactgtaacagttcagtgtgtcatagtgtctctctctaggaggtgaactactgtaacagttcagtgtgttatagtgtcaccaggatgtgaactactgtaacatttcagtgtgttatagtttctcttggaggtga
>TU1356165
gtgttatagtgtctctaggagctgaactactgtaacagttcagtgtgttataatgtctctcactaagacatgaaacactgtaacagttccgtgtgttattgtgtctctaggaggtgaactactgtaacagttcagtgtgttattgtgtctctaggaggtgaactactgtaacagttcagtgtactgttgtgtctcttggaggtgaactactgtaacagtttagtgtg
>TU1356164
taacagttcagtgtgttatagtgtctcaaggaggtgaactactgtaacagttcagtcttttatagtgtctctctctaggaggtgaactactgtaacagttcagtgtgttatagtgtctcaaggaggtgaactactgtaacagttcagtgtgtcatagtgtctctctctaggaggtgaactactgtaacagttcagtgtgttatagtgtctcaaggaggtgaaccactgtaacagttcagtgtgttatagtgtctctaagaggtgaactactgtaacggttcagtgtactgttgtttctcaaggaggtgaacgactgtaacagttcagtgtgttatagtgtctctaggaggtgaactactgtaacagttcagtgtgttataatgtctctaagaggtgaactactgtaacagttcagtgtactgttgtgtctcttggaggtgaactactgtaacagtttagtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1356163 False 1063 lncRNA 0.39 5 55955185 56024767
TU1356162 False 882 lncRNA 0.41 3 56012049 56022524
TU1356165 False 227 lncRNA 0.41 2 56012049 56022138
TU1356164 True 463 lncRNA 0.41 2 56021584 56022138
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110538766 LOC105013005 coding upstream 39281 55834111 ~ 55915904 (+)
LOC110539040 LOC106601832 coding upstream 560420 55340702 ~ 55394765 (+)
LOC110486846 LOC106601652 coding upstream 1014694 54939020 ~ 54940491 (+)
narfl LOC106606697 coding upstream 1021763 54925567 ~ 54933422 (+)
LOC110486830 LOC106606695 coding upstream 1029744 54907568 ~ 54925441 (+)
LOC110485236 LOC106606588 coding downstream 10873 56035640 ~ 56088193 (+)
LOC110486855 bri3 coding downstream 89396 56114163 ~ 56121445 (+)
LOC110538765 LOC105013005 coding downstream 571854 56596621 ~ 56674315 (+)
LOC118938096 NA coding downstream 653835 56678602 ~ 56679864 (+)
LOC118938331 LOC106606599 coding downstream 663816 56688583 ~ 56926185 (+)
G1189027 NA non-coding upstream 50228 55903795 ~ 55904957 (+)
G1188996 NA non-coding upstream 112007 55842792 ~ 55843178 (+)
G1188946 NA non-coding upstream 201609 55753287 ~ 55753576 (+)
G1188830 NA non-coding upstream 335623 55619351 ~ 55619562 (+)
G1188817 NA non-coding upstream 347632 55607303 ~ 55607553 (+)
G1189092 NA non-coding downstream 96460 56121227 ~ 56123750 (+)
G1189112 NA non-coding downstream 122875 56147642 ~ 56148404 (+)
G1189093 NA non-coding downstream 136064 56160831 ~ 56161860 (+)
G1189128 NA non-coding downstream 153430 56178197 ~ 56179439 (+)
G1189040 NA other upstream 15828 55938472 ~ 55939357 (+)
G1188386 NA other upstream 832566 55121261 ~ 55122619 (+)
G1188344 NA other upstream 957890 54993674 ~ 54997295 (+)
axin2 LOC105026129 other upstream 1654872 54272638 ~ 54300365 (+)
G1189738 NA other downstream 811649 56836416 ~ 56836996 (+)
G1189675 srebf1 other downstream 853161 56877928 ~ 56925607 (+)
G1189819 NA other downstream 1029686 57054453 ~ 57055617 (+)
LOC110514101 LOC106606600 other downstream 1571253 57522756 ~ 57640558 (+)
LOC110486909 LOC106601794 other downstream 1598906 57613961 ~ 57625405 (+)

Expression

G1189044 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

G1189044 Expression in each Bioproject

Bar chart with 9 bars.
G1189044 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Co-expression Network