G1189058


Basic Information

Item Value
gene id G1189058
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 56010936 ~ 56023484 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1356186
gaggacctgagccctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccacctggctgtgctgctgctccagtttcaactgttctgccttattattatttgaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccaccccacatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtaccgcactttgagatatcagctgatgtacgaagggctatataaatacatttgatttgatttgaattgatatagtgtcaccaggatgtgaactactgtaattgttcagtgtgttatagtttctcttgaaggtgaactactgtaaaagttcagtgtgttatagtgtctctaggatgtgaactacttcaacacttcagtgtgttattgtgtctctatttatgaggtgaactattgtaacagttcagtgtgttatagtgtcaccaggaggtgaactactgtaacagttcagagtgttatagtgtctctaagtggtgaactactgtaacagtttagtgtgttatagtgtttctaagaggtgaactactgtaacagttcagagtgttatagtgtctctaagaggtgaactactgtaacagtttagtgtgttatagtgtctctaagtggtgaactactgtaacagtttagtgtgttatagtgtttctaagaggtg
>TU1356189
gaggacctgagccctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccacctggctgtgctgctgctccagtttcaactgttctgccttattattattcgaccatgctggtcatttatgaacatttgaacatcttggccatgtcctgttataatctccacccggcacagccagaagaggactggccaccccacatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtaccgcactttgagatatcagctgatgtacgaagggctatataaatacatttgatttgatttgaattgatatagtgtcaccaggatgtgaactactgtaattgttcagtgtgttatagtttctcttgaaggtgaactactgtaaaagttcagtgtgttatagtgtctctaggatgtgaactactgtaacagttcagtgtgttattgtgtctctatttaggaggtgaactactgtaacagttcagtgtgttatagtgtctctaagaggtgaactactgtaacagttcagtgtgttatgttGTCTCTCACTTAGACGAGAAATACTGTAtcatttcagtgtgttatagtgtttctaagaggtgaactactgtaacagttcagtgtgttatattgtctctaggagctgaactactgtaacagttcagtgtactgttgtgtctcaaggaggtgaactactgtaacagttcagtgtgttatagtgtctctaggaggtgaactactgtaacagttcagtgtgttatagtgtctctaggaggtgaactactgtaacagttcagtgtgttatagtgtctctaagaggtgaactactgtaacagttcagtgtgttatcgtATCACCAGTTGGTGAACAACTGTAAacgttcagtgtgttatagtggctctaagaggtgaactactgtaacagttcagtttgttatagtgtctctcactaatacgtgaaatactgtaacagttc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1356186 False 821 lncRNA 0.42 2 56010936 56019462
TU1356189 True 1066 lncRNA 0.42 3 56010936 56023484

Neighbor

gene id symbol gene type direction distance location
LOC110538766 LOC105013005 coding upstream 95032 55834111 ~ 55915904 (+)
LOC110539040 LOC106601832 coding upstream 616171 55340702 ~ 55394765 (+)
LOC110486846 LOC106601652 coding upstream 1070445 54939020 ~ 54940491 (+)
narfl LOC106606697 coding upstream 1077514 54925567 ~ 54933422 (+)
LOC110486830 LOC106606695 coding upstream 1085495 54907568 ~ 54925441 (+)
LOC110485236 LOC106606588 coding downstream 12156 56035640 ~ 56088193 (+)
LOC110486855 bri3 coding downstream 90679 56114163 ~ 56121445 (+)
LOC110538765 LOC105013005 coding downstream 573137 56596621 ~ 56674315 (+)
LOC118938096 NA coding downstream 655118 56678602 ~ 56679864 (+)
LOC118938331 LOC106606599 coding downstream 665099 56688583 ~ 56926185 (+)
G1189057 NA non-coding upstream 7965 55999436 ~ 56002971 (+)
G1189042 NA non-coding upstream 52640 55947698 ~ 55958296 (+)
G1189027 NA non-coding upstream 105979 55903795 ~ 55904957 (+)
G1188996 NA non-coding upstream 167758 55842792 ~ 55843178 (+)
G1188946 NA non-coding upstream 257360 55753287 ~ 55753576 (+)
G1189092 NA non-coding downstream 97743 56121227 ~ 56123750 (+)
G1189112 NA non-coding downstream 124158 56147642 ~ 56148404 (+)
G1189093 NA non-coding downstream 137347 56160831 ~ 56161860 (+)
G1189128 NA non-coding downstream 154713 56178197 ~ 56179439 (+)
G1189040 NA other upstream 71579 55938472 ~ 55939357 (+)
G1188386 NA other upstream 888317 55121261 ~ 55122619 (+)
G1188344 NA other upstream 1013641 54993674 ~ 54997295 (+)
axin2 LOC105026129 other upstream 1710623 54272638 ~ 54300365 (+)
G1189738 NA other downstream 812932 56836416 ~ 56836996 (+)
G1189675 srebf1 other downstream 854444 56877928 ~ 56925607 (+)
G1189819 NA other downstream 1030969 57054453 ~ 57055617 (+)
LOC110514101 LOC106606600 other downstream 1572536 57522756 ~ 57640558 (+)
LOC110486909 LOC106601794 other downstream 1600189 57613961 ~ 57625405 (+)

Expression


Co-expression Network