G1189442


Basic Information

Item Value
gene id G1189442
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 56408436 ~ 56408734 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1356652
gaaggtctacagtagcctcaacagcactctgtagggtagcatggtgtagccagaggacagctagttttcatcctcctctgggtacattgacttcaatacaaaacctaggaggctcatggttctcaccccctaccatagacttacacagtaattattacaacttccggaggacgtcctccagcctatcagaTATCTTgctgcatgaactgacatgttgtccacccaatcaaaggatcagagaattaatctagtactgaaagcataagctacagctagctagcactgcagtgtataaaatg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1356652 True 299 lncRNA 0.45 1 56408436 56408734

Neighbor

gene id symbol gene type direction distance location
LOC110538788 bri3 coding upstream 284852 55424865 ~ 56123584 (+)
LOC110486855 bri3 coding upstream 286991 56114163 ~ 56121445 (+)
LOC110485236 LOC106606588 coding upstream 320243 56035640 ~ 56088193 (+)
LOC110538766 LOC105013005 coding upstream 492532 55834111 ~ 55915904 (+)
LOC110539040 LOC106601832 coding upstream 1013671 55340702 ~ 55394765 (+)
LOC110538765 LOC105013005 coding downstream 187887 56596621 ~ 56674315 (+)
LOC118938096 NA coding downstream 269868 56678602 ~ 56679864 (+)
LOC118938331 LOC106606599 coding downstream 279849 56688583 ~ 56926185 (+)
LOC110486865 NA coding downstream 551864 56960598 ~ 56963017 (+)
LOC110517037 drc3 coding downstream 599266 57008000 ~ 57019247 (+)
G1189439 NA non-coding upstream 2956 56405227 ~ 56405480 (+)
G1189436 NA non-coding upstream 10521 56397601 ~ 56397915 (+)
G1189434 NA non-coding upstream 12251 56395886 ~ 56396185 (+)
G1189432 NA non-coding upstream 15996 56391717 ~ 56392440 (+)
G1189430 NA non-coding upstream 17146 56390987 ~ 56391290 (+)
G1189487 NA non-coding downstream 33999 56442733 ~ 56443057 (+)
G1189499 NA non-coding downstream 85071 56493805 ~ 56494286 (+)
G1189598 NA non-coding downstream 239839 56648573 ~ 56650112 (+)
G1189607 NA non-coding downstream 253934 56662668 ~ 56663270 (+)
G1189668 NA non-coding downstream 273742 56682476 ~ 56682882 (+)
G1189040 NA other upstream 469079 55938472 ~ 55939357 (+)
G1188386 NA other upstream 1285817 55121261 ~ 55122619 (+)
G1188344 NA other upstream 1411141 54993674 ~ 54997295 (+)
axin2 LOC105026129 other upstream 2108123 54272638 ~ 54300365 (+)
G1189738 NA other downstream 427682 56836416 ~ 56836996 (+)
G1189675 srebf1 other downstream 469194 56877928 ~ 56925607 (+)
G1189819 NA other downstream 645719 57054453 ~ 57055617 (+)
LOC110514101 LOC106606600 other downstream 1187286 57522756 ~ 57640558 (+)
LOC110486909 LOC106601794 other downstream 1214939 57613961 ~ 57625405 (+)

Expression


Co-expression Network