XLOC_030865


Basic Information

Item Value
gene id XLOC_030865
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 10967799 ~ 10971601 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061522
CTCTGCAAAGCAAGTTGGAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAGTTAGAAGACTTTGGTCTGTGACGTAGAGGAGTGGGCAGAGGtagcagaagcAAAGACAACAAACAACAGAAGTGATATGGATGTCTTCGTCATATGGCATGactcTGCTGACCCAGCAACAAAGAGGAGAGTGTTCAACATCATCCTGCTAGTCAGGATTCTTCAGGAGAAGCAGTGGATTCTTGTGGCAGAGATGGCCAACCACTATAAATACATTTCAACTCATCCTGGTTCCTTCAAAGAACTTTCCTGCTTGTTTGCTACTGAAaaattcgacatgtggcctaaacgaagaggggttaaaaggtctatggatcatcattctcagaaagcaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctacaaggtacctgcaagttttggctggagcagagaacatacattttttaaataaagctccagctgatgagtttgacattgactgtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaacaaaatctgtaaaaataaaataaaattttcatcaTCT
>TCONS_00061523
caggtgtacattataaggtgttcactgttcagatatgaatatttttttctttgctcttttcaggttctttagatttctttaaaaatccaattttgttttctaataagcaAAAAGTAAAGCCACTTTACCCATGTCTGTATGTTAAATTGAGCTTGtctttctctctatctctgttaacacatttgtatttgtttgattaattcttGTGTCTTTCAGCCTGTTTCTGCCTATCACCATGAGTGATTCCTTGATACTCATATTTATCATCAAGATCTCAATTATAAGCTCAAGTCTTGATGACAACTTGATGATCTGCAGGAAGCACCACCATGTATAGAGGGCAAAGACCACTCTGGAATCAGTCAAGGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGGGCCTTGCTCCAGTGACTGTTGGTGAAATGGAGTGAGGCATACAAGGATATGTGTGGTTTTACTCTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTATTGATATCAGAAGGTAACGATATCCAGTAGAATTTGTTTTAGTTGTTCTGTAACCTATTTAAATAGTATTGTGATTTTTGATTGCTTATCACTGTAGACCACAACAGCTCTGCAAAGCAAGTTGGAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAGTTAGAAGACTTTGGTCTGTGACGTAGAGGAGTGGGCAGAGGGTGAggaaattcttattaatattacatgtagtcatgaaaaattgtaagtgttactattattgtcatttttttcagtagcagaagcAAAGACAACAAACAACAGAAGTGATATGGATGTCTTCGTCATATGGCATGactcTGCTGACCCAGCAACAAAGAGGAGAGTGTTCAACATCATCCTGCTAGTCAGGATTCTTCAGGAGAAGCAGTGGATTCTTGTGGCAGAGATGGCCAACCACTATAAATACATTTCAACTCATCCTGGTTCCTTCAAAGAACTTTCCTGCTTGTTTGCTACTGAAaaattcgacatgtggcctaaacgaagaggggttaaaaggtctatggatcatcattctcagaaagcaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctacaaggtacctgcaagttttggctggagcagagaacatacattttttaaataaagctccagctgatgagtttgacattgactgtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaacaaaatctgtaaaaataaaataaaattttcatcaTCT
>TCONS_00061944
CTGTAGACCACAACAGCTCTGCAAAGCAAGTTGGAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAGTTAGAAGACTTTGGTCTGTGACGTAGAGGAGTGGGCAGAGGcagaagcAAAGACAACAAACAACAGAAGTGATATGGATGTCTTCGTCATATGGCATGactcTGCTGACCCAGCAACAAAGAGGAGAGTGTTCAACATCATCCTGCTAGTCAGGATTCTTCAGGAGAAGCAGTGGATTCTTGTGGCAGAGATGGCCAACCACTATAAATACATTTCAACTCATCCTGGTTCCTTCAAAGAACTTTCCTGCTTGTTTGCTACTGAAaagtatgtatttgtattatttggcacagacataagcataaggttacccagtccaaatgatattaatatatttttatgttgttgtgttcttttaagattcgacatgtggcctaaacgaagaggggttaaaaggtctatggatcatcattctcagaaagcaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctacaaggtacctgcaagttttggctggagcagagaacatacattttttaaataaagctccagctgatgagtttgacattgactgtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatg
>TCONS_00061524
catttttattttgttcatgaaaagcgtctgtaaactgggtcgaaactactgtatgaataaacttcggtccacgtgacatcccttcacggtgagtttaacgccgctctgctattggtcaaactgcatcaacggtgagttctcagatgagttcaactgtcaacattaaatagtatgttaatgctgcataatgtatttttattggagattagttggtgtttataaatattttatcattaactttatatttaatgagtgaaaatatattcggttgtccagtttaggttaactataaaactatactactaataaaactttgattcattcatattatttattttttttttttactttaaaaaatattacatttcaagaactaagtttaaaaatgtttttggctgatcttttttcattttaaattattcattgaagttggggtcattgtatgtggcgatctattttttacagtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTTGATACTCATATTTATCATCAAGATCTCAATTATAAGCTCAAGTCTTGATGACAACTTGATGATCTGCAGGAAGCACCACCATGTATAG

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0001707 mesoderm formation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001710 mesodermal cell fate commitment biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0002043 blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0060976 coronary vasculature development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0043951 negative regulation of cAMP-mediated signaling biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051279 regulation of release of sequestered calcium ion into cytosol biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0048333 mesodermal cell differentiation biological_process
GO:0007369 gastrulation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0010522 regulation of calcium ion transport into cytosol biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0001667 ameboidal-type cell migration biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0030902 hindbrain development biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:1904427 positive regulation of calcium ion transmembrane transport biological_process
GO:0035479 angioblast cell migration from lateral mesoderm to midline biological_process
GO:0000785 chromatin cellular_component
GO:0044454 obsolete nuclear chromosome part cellular_component
GO:0005634 nucleus cellular_component
GO:0000228 nuclear chromosome cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061522 False 624 lncRNA 0.40 4 10967799 10968681
TCONS_00061523 False 1402 lncRNA 0.38 5 10967799 10970573
TCONS_00061944 False 690 lncRNA 0.40 3 10967839 10968697
TCONS_00061524 True 646 lncRNA 0.33 2 10970237 10971601

Neighbor

gene id symbol gene type direction distance location
XLOC_030864 rtn4r coding downstream 21420 10765611 ~ 10946379 (-)
XLOC_030863 CR790366.3 coding downstream 243134 10720894 ~ 10724665 (-)
XLOC_030862 BX511089.3 coding downstream 458985 10507826 ~ 10508814 (-)
XLOC_030861 NA coding downstream 467002 10488937 ~ 10500797 (-)
XLOC_030860 si:ch73-42k18.1 coding downstream 728720 10232193 ~ 10239079 (-)
XLOC_030866 NA coding upstream 65576 11037177 ~ 11038305 (-)
XLOC_030867 prodhb coding upstream 270690 11242291 ~ 11271209 (-)
XLOC_030868 CABZ01077121.1 coding upstream 306825 11278426 ~ 11283521 (-)
XLOC_030869 NA coding upstream 385036 11356637 ~ 11466153 (-)
XLOC_030870 CABP7 coding upstream 530977 11502578 ~ 11573490 (-)
XLOC_030859 NA non-coding downstream 750193 10215514 ~ 10217606 (-)
XLOC_030853 NA non-coding downstream 1085395 9880188 ~ 9882404 (-)
XLOC_030871 NA non-coding upstream 605072 11576673 ~ 11663328 (-)
XLOC_030876 castor1 non-coding upstream 1010763 11982364 ~ 12031921 (-)

Expression


Co-expression Network