XLOC_030867 (prodhb)


Basic Information

Item Value
gene id XLOC_030867
gene name prodhb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 11242291 ~ 11271209 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060018
GAATTCATTCAGCGCTCCTGTAAAATTACTTCTAAAAAAAGAgccagtttcactttcactgctgcCGTTACCACTAAAATAACTCTAAAAGAAAATCACCTGCCTGCTCAGGTGGAAGTTCTGAAGATGGTTTCTCGGCTATTAAGATGACTGCCTTGGGGCGCCCGCAATTCCTGCTCCAGTTCTCCGAAGTGCTGGTGAAATGGAGACGCTTTTTCAGTTTCCTTGCTAGCAAGCAGGGGAAAGACGGCATGGAGGTGCTGGAGCAGAAACTGGATCTAGAGCAATTGCAGATGTGTCTAGCAAGGCTAGGAGCCGAAGGCAACATTCAGAGCTTCTTCTCTGATGGACGACTGCACTCATCAGGCATTGTGGACATGCTGGATTGGAACAGACTGATAGATGAAAGAATGAAGATATCTGATCTACTTGTTGTCCCAAACCTGCAGACCGGTCAGCTGGAGCCTCTTCTATCCAGGTTTACCGAGGAAGAGGAAAGGCAGATGAAACGGATGCTCCAGCGACTGGACGTCTTGGCGAAGCATGCGGTGGAAAATGGTGTCAGGCTGATGGTGGATGCTGAACAGACGTATTTCCAGCCTGCGATCAGCAGACTCACAGTGGAGATGAAGAGAAGCTTCAACAGAGACAAAGCTGTCGTTTTCAACACCTATCAGTGCTACCTCAAAGAGGCATTCGATAATGTGTCCATGGACGTTGAGCTTTCCAGAAGGGAGGGCTGGTGTTTCGCTGCCAAGTTGGTGAGGGGGGCTTACATGTACCAGGAGAGAAGCCGAGCGGCGGAGATTGGATACGAAGACCCCATCAACCCTGACTACGAATCCACTAACAGAATGTACCACAGGTGTCTGGATTACGTGCTGGAGGAGATCCAACGCAATAAGAAAGTGAATGTCATGGTGGCGTCGCACAATCTGGACACGGTTAAACACACACTCAGAAGGATGAATGAAATGGGTCTGCAGCCTACAGATAAGAAGGTGTGCTTCGGCCAGCTCCTGGGAATGTGTGACCAAATCAGCTTTCCGttagCTCAGGCCGGGTTTCCGGTGTACAAGTACGTCCCGTATGGTCCAGTGAACGAGGTGATCCCCTATCTGTCCCGTCGAGCACAGGAGAACCGCGGCTTCATGAAAGGAGTGCAAATGGAGAGAGAACTGCTGTGGAAAGAGCTGATGAGGAGACTGAGCAGCGGACAGATCCTCTACACACCACCTGTATAAAACACACACTCCTGCTGTTTATTCCTCTTCACCCATCCATTCATAAATCTATTTATATTCTCAGCGAGCCtgttctttattttaatgtgcacACATTCAAATCCAATAACTTAGATGGCTGAATATAACACTTAAATGCTAGAAATGAAAGCTATTTTTAGAAAAATTTCAAGACTTAGTGTTGAAACAGGATCTTTATCACCTATTATACTGTCATATGTATTATATTAggcaagttaatatatatatatataaaatatatatttatatagtgcaaTATGTCGGACGTtacacagtgctcatttagtgaaggcacagctaaacagatgtgttttcagtcttgatttgaatgtgcctaatgtttgagcacatctgatcatttctggaagttgATTCCAGCGGAGGGAAATTCTAATTTACTTGATTCTAATGATCTGAAGCAATTATTAGGTTTCTATTTTGTCAGCATATCTgcaatgtattgaggtcctaggccatttagtgatttatagaccagtaataataatttaaaatctatgaatgtaactgggagccagtgtaaagttCTGAGGAGTGGTGTGATGttctctgattttctggttctagtcagaatcctggcagcagttttctggatgagctgcaactgtttgACTGtgtttttgggaaggccagtaaggaatccattacagtaatccaccctgctgctgataaaggCATtgacaagtttctctaaatcctgaatttttgcaatgtttttgagatgataatatgctgatttagttaccgCTTTGACTTGACTACTGAAATGCAGATTTGACttcagaatcacaccaagattcttgatctTACCCCTAGAGCCAAGATACCCATTCAcattgagaacctcatctctgttccaaaatgcaatgacttcagtctATAGACATATGCTAAAAGTTaatagttttctctttgtttataGACATATACTATAATATATGTCTATTAACATATATAGACAATGTGTAAAGctctttgagtgtctagaaaagtgctatatgaatgtaaggaattattattattattaaatttgtggTATTTCATTTTTGTGAAAATTGAGCACCtgttaaaaatgcacaaaattgTGAAAATCGTGTGTAGGCCATATTGCAGTTTGTTGTTAAAGTTATTAAcaaatataacatattttttGATAAAGAAACTTTTCTTTATGTTTTTCCATTGACAAGCATTTTTAACAAGAAACAGAAGACAATGCTTTACAAATATAACATTCCATATCTCcttttctttaaagtaaaaagaaagtcataaaagtaataaaatatacagaaatTAAGTTACTGacaaaactgttaataaaactaGTATTGGGGTAGTAAACGACAATGCTGTAAAAGATTGAACAAACATATGTATCATATATGTCATAATAATATCagaattattcattttcctttggcttagtctttatttaagaagtcgccacagcggattaaaTCGCCAgttattccagcaaatgttttacacaattGATGCCTCAGTTtccagttcttagctgacaggagtggcaacttgtggtcttctgctgctgtagcccttccgcctcaaggttggacgtcttgtgcgttcagagatgctcttctgacctcggttataacgagtggttatttgagttactgttgcctttctatcagctcgcaccagtctggccattctcgtatgacctctggtatcaacaaggcatttgcgcccacagagctgttgctcactggatatttcctctttttttgtgtcattctctgtaaaccctagagatgattgtgtttgaaaatcccattagatcagcattttctgaaatactcagaccagcccatctggcaccaacaaccctgccacgttcaaagtcacttaaatcacctttcttcctcgaGACGAaatgatcgtcttgaccatgtgattggctgatttgaaatttgcgttaacgagcaggtgtacctaataaagtggccggtgagtgtgtatatacACTGCACAATTATTTGGCAAGTTGTATTTTTGAGAATTCATTTTGTTATTGTACAACTAGTGTTCTTGGTCAATCCAAAATGTTAAGAAGCCCTCAAACCTGAACATTTAAGTAGCAAAAGTGAAGCTTTGGCTTTTTTAAAGAGAATAACTGCATGTACACTGTTATTAGGCAACCATTATTGTGCAGAATTATTTTGCGACTAAATAATTAACAAAGATTTTCCTATCTCACTTGG

Function

symbol description
prodhb Predicted to enable proline dehydrogenase activity. Predicted to act upstream of or within proline catabolic process. Human ortholog(s) of this gene implicated in amino acid metabolic disorder; hyperprolinemia type 1; and schizophrenia 4. Orthologous to human PRODH (proline dehydrogenase 1).

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006560 proline metabolic process biological_process
GO:0006562 proline catabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0004657 proline dehydrogenase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101116-1 Predicted to enable proline dehydrogenase activity. Predicted to act upstream of or within proline catabolic process. Human ortholog(s) of this gene implicated in amino acid metabolic disorder; hyperprolinemia type 1; and schizophrenia 4. Orthologous to human PRODH (proline dehydrogenase 1).

Ensembl:

ensembl_id ENSDARG00000086512

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060018 True 3511 mRNA 0.40 10 11242291 11271209

Neighbor

gene id symbol gene type direction distance location
XLOC_030866 NA coding downstream 203986 11037177 ~ 11038305 (-)
XLOC_030865 NA coding downstream 270690 10967799 ~ 10971601 (-)
XLOC_030864 rtn4r coding downstream 295912 10765611 ~ 10946379 (-)
XLOC_030863 CR790366.3 coding downstream 517626 10720894 ~ 10724665 (-)
XLOC_030862 BX511089.3 coding downstream 733477 10507826 ~ 10508814 (-)
XLOC_030868 CABZ01077121.1 coding upstream 7217 11278426 ~ 11283521 (-)
XLOC_030869 NA coding upstream 85428 11356637 ~ 11466153 (-)
XLOC_030870 CABP7 coding upstream 231369 11502578 ~ 11573490 (-)
XLOC_030871 NA coding upstream 305464 11576673 ~ 11663328 (-)
XLOC_030872 nf2a coding upstream 453219 11724428 ~ 11809710 (-)
XLOC_030861 NA non-coding downstream 741494 10488937 ~ 10500797 (-)
XLOC_030876 castor1 non-coding upstream 711155 11982364 ~ 12031921 (-)
XLOC_030880 CR735143.1 non-coding upstream 921689 12192898 ~ 12193014 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000338_01294516_01310695 NA coding CI01000338 null 1293475 ~ 1310695 (-)