Gene
RNA
| Item | Value |
|---|---|
| gene id | G1189675 |
| gene name | srebf1 |
| gene type | unknown |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 56877928 ~ 56925607 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| srebf1 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within liver development; pancreas regeneration; and type B pancreatic cell development. Predicted to be active in nucleus. Is expressed in female organism; liver; male organism; and ventral wall of dorsal aorta. Human ortholog(s) of this gene implicated in disease of metabolism and type 2 diabetes mellitus. Orthologous to human SREBF1 (sterol regulatory element binding transcription factor 1). |
| description |
|---|
| sterol regulatory element-binding protein 1-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1356914 | True | 815 | TUCP | 0.53 | 2 | 56877928 | 56925607 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118938096 | NA | coding | upstream | 198064 | 56678602 ~ 56679864 (+) |
| LOC110538765 | LOC105013005 | coding | upstream | 203613 | 56596621 ~ 56674315 (+) |
| LOC110486855 | bri3 | coding | upstream | 756483 | 56114163 ~ 56121445 (+) |
| LOC110485236 | LOC106606588 | coding | upstream | 789735 | 56035640 ~ 56088193 (+) |
| LOC110538766 | LOC105013005 | coding | upstream | 962024 | 55834111 ~ 55915904 (+) |
| LOC110486865 | NA | coding | downstream | 34991 | 56960598 ~ 56963017 (+) |
| LOC110517037 | drc3 | coding | downstream | 82393 | 57008000 ~ 57019247 (+) |
| LOC110516169 | LOC106601817 | coding | downstream | 94095 | 57019702 ~ 57027741 (+) |
| LOC110486862 | LOC106606647 | coding | downstream | 123325 | 57048932 ~ 57053449 (+) |
| LOC110486876 | rn151 | coding | downstream | 160241 | 57085848 ~ 57089925 (+) |
| G1189744 | NA | non-coding | upstream | 11114 | 56866472 ~ 56866814 (+) |
| G1189727 | NA | non-coding | upstream | 54997 | 56822727 ~ 56822931 (+) |
| G1189725 | NA | non-coding | upstream | 58881 | 56817860 ~ 56819047 (+) |
| G1189723 | NA | non-coding | upstream | 62835 | 56814893 ~ 56815093 (+) |
| G1189718 | NA | non-coding | upstream | 69678 | 56808043 ~ 56808250 (+) |
| G1189774 | NA | non-coding | downstream | 19272 | 56944879 ~ 56945436 (+) |
| G1189790 | NA | non-coding | downstream | 59254 | 56984861 ~ 56985087 (+) |
| G1189791 | NA | non-coding | downstream | 59692 | 56985299 ~ 56985582 (+) |
| G1189792 | NA | non-coding | downstream | 61431 | 56987038 ~ 56987272 (+) |
| G1189795 | NA | non-coding | downstream | 64423 | 56990030 ~ 56990342 (+) |
| G1189738 | NA | other | upstream | 40932 | 56836416 ~ 56836996 (+) |
| G1189040 | NA | other | upstream | 938571 | 55938472 ~ 55939357 (+) |
| LOC110539040 | LOC106601832 | other | upstream | 1511612 | 55340702 ~ 55394765 (+) |
| G1188386 | NA | other | upstream | 1755309 | 55121261 ~ 55122619 (+) |
| G1188344 | NA | other | upstream | 1880633 | 54993674 ~ 54997295 (+) |
| G1189819 | NA | other | downstream | 128846 | 57054453 ~ 57055617 (+) |
| LOC110514101 | LOC106606600 | other | downstream | 670413 | 57522756 ~ 57640558 (+) |
| LOC110486909 | LOC106601794 | other | downstream | 698066 | 57613961 ~ 57625405 (+) |
| G1190568 | NA | other | downstream | 1039909 | 57950494 ~ 57994502 (+) |
| G1190689 | NA | other | downstream | 1115279 | 58040886 ~ 58041295 (+) |
