XLOC_030869


Basic Information

Item Value
gene id XLOC_030869
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 11356637 ~ 11466153 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061946
GGAACTTTTGGGGACGAAATGGAGCGTGAAGGTTTAACTCACACCGAGTTGTTGGtgtactactGTTCGGATGGAGAATTTAGGAGTTTTGTGTGCTTTACCTTCTCTTTGAGATTCCCAGCATATCCGAGGTACATCCGCAACACCTCGAATATACTGATCAGCACCATCCCTGTGACCAGAAGACACTGGTAATACACCGGCAGATAACTGAACTACAGGAACAGAGAAAGAAAAGCAGACCTTTAACTGCAGCATCAGAAGCTCAGAGATCCACCAGAAGGGGAAGAAAAACATGTTGAAGTAGAGCATCATCTGTAGCGGGAGATGAGACGACACCTCCGCACACGCTAGACCACATCAGATTGTGTTTTGTTAGGTAGTGGTCTTTAAAGTCTGCGCTGTCTCTGGTCCTGTTGTTGATGAAGACAGAGCCGCTGACATTGGCCAGACCCACTCTCAGGTTCTGAGGGATCGGTGTGTAGAAGACAGGCATGATGGAcaacacaagcaaacacacattCAGTCCTACACACTCCTTTGCTGCAGTCAGATTAACAGGAGTCTTCAAGAGCTAACCGGATTAAACCCCAACAAACAGATGGAGTCTGACACTGGATTAAGATGTCGTCATCACTCAGAGATCGTTCTCTGCAGCCCTATGCAAGTCTCGAATGTCTAGATGACAGAAATCCCCCTTCAGTTTAAGTCTATGAGCTGAAATGGCTACCAGATGTGTATTCAGTGTGTTGCTGAACTCTACTGTGACGGAGCTCCAGGTCTGAAATGAGAGATGCCTTATATCCTCACCTTCATGGGGTACGCAGTAAACCGGCCCGTCTTCGCTGTTCTCGAAGGAAGAGAAAGATTCCTGGGATGACCATGACGGAGAAGGCTGGTCCACCACAGATGGAGGCTCGATGATACTGTTGAAGGTGTTTTCAGGATCGTGGTGGGTGACTAAGGGTTTGGACAAGGGGGAAACAAAACAGAGAGGTCAGGTCAAATCAGTGGAGGAATTTCTTTGGGTTTCTCTTTGCACAAAGTGCTCATTGACGACGTGTGATGATGTTTGGGCTCTACTGGAGTCCACTTTAGTGGCTGACTGGGGCAAATAGTGGAGCATGGAGAATCTGTATGAAAGCCAGCATTGACTGAGTGAAACATCAGACTTCAAAAGCTTGCTGGTATGGAATGATCTGCATGCCTCTGAAGACTTGGGAATTAGTTCTGGTGTGTACAGGTCAGGGTTAACACTGCTGTTTAAAGTTGGTTTGgtgctttttaaataacataGATGTGATCTGGTAAAATGAATGCACAGTCCCACCCAAATTTTATACCAACATAgacagttaataaaataatttttagttaaataaaatcagtacaaaatatcattacaaaacagttTTATGTAGGATATATTAACAACATATGTATAATATAAAGGTATATACAAATTAAAGATTGAATGTATTTTTCTTGTATAACACTGAAGCACATTTATACAGTTTGTTATATAATTCATAcagaatcatttatttatttatttatacagggacaatgtacaacatgacacgttgtgccagagttagctataaagctaatttacatctgtagtccctggaCAGGAAGTTGTAACaaatttgaattatatatatatatatatatatatatatatatatatggggcatTAGGagccacacagactgcaggttgagcgccccctgttggcctcacttACAATGTTACTTTCCTGTACAATGGAGATAATACTTTGAAGGTAAAGGAAAATATTCtgtgtgtttattcattcattcattttcttgtcggcttagtccctttattaattaaaccgccaacttatc
>TCONS_00061526
GGAACTTTTGGGGACGAAATGGAGCGTGAAGGTTTAACTCACACCGAGTTGTTGGtgtactactGTTCGGATGGAGAATTTAGGAGTTTTGTGTGCTTTACCTTCTCTTTGAGATTCCCAGCATATCCGAGGTACATCCGCAACACCTCGAATATACTGATCAGCACCATCCCTGTGACCAGAAGACACTGGTAATACACCGGCAGATAACTGAACTACAGGAACAGAGAAAGAAAAGCAGGTAGTGGTCTTTAAAGTCTGCGCTGTCTCTGGTCCTGTTGTTGATGAAGACAGAGCCGCTGACATTGGCCAGACCCACTCTCAGGTTCTGAGGGATCGGTGTGTAGAAGACAGGCATGATGGAcaacacaagcaaacacacattCAGTCCTACACACTCCTTTGCTGCAGTCAGATTAACAGGAGTCTTCAAGAGCTAACCGGATTAAACCCCAACAAACAGATGGAGTCTGACACTGGATTAAGATGTCGTCATCACTCAGAGtccAGAGTCTGTCCGTGTCTGCGGCTTTGAGAATCTGGACGTCATAACCAGCTGGAGGCTGCAGTACCAGCGCTGACCGGCGGGTGTCACAGCTCGTCCCGGGGCGCTCTGAGGGGGAAATGTTTGAACTCCTCCGGGACCTCCTCGCCTTTCTCTGACCTCTTGTAGAAACCCAGAGAATCCAGCAAACTGCTGATCTCATCTGCTTTCATCTTTTTCACAGGAACAACCTGAGATGCCTTATATCCTCACCTTCATGGGGTACGCAGTAAACCGGCCCGTCTTCGCTGTTCTCGAAGGAAGAGAAAGATTCCTGGGATGACCATGACGGAGAAGGCTGGTCCACCACAGATGGAGGCTCGATGATACTGTTGAAGGTGTTTTCAGGATCGTGGTGGGTGACTAAGGGTTTGGACAAGGGGGAAACAAAACAGAGAGGTCAGGTCAAATCAGTGGAGGAATTTCTTTGGGTTTCTCTTTGCACAAAGTGCTCATTGACGACGTGTGATGATGTTTGGGCTCTACTGGAGTCCACTTTAGTGGCTGACTGGGGCAAATAGTGGAGCATGGAGAATCTGTATGAAAGCCAGCATTGACTGAGTGAAACATCAGACTTCAAAAGCTTGCTGGTATGGAATGATCTGCATGCCTCTGAAGACTTGGGAATTAGTTCTGGTGTGTACAGGTCAGGGTTAACACTGCTGTTTAAAGTTGGTTTGgtgctttttaaataacataGATGTGATCTGGTAAAATGAATGCACAGTCCCACCCAAATTTTATACCAACATAgacagttaataaaataatttttagttaaataaaatcagtacaaaatatcattacaaaacagttTTATGTAGGATATATTAACAACATATGTATAATATAAAGGTATATACAAATTAAAGATTGAATGTATTTTTCTTGTATAACACTGAAGCACATTTATACAGTTTGTTATATAATTCATAcagaatcatttatttatttatttatacagggacaatgtacaacatgacacgttgtgccagagttagctataaagctaatttacatctgtagtccctggaCAGGAAGTTGTAACaaatttgaattatatatatatatatatatatatatatatatatatggggcatTAGGagccacacagactgcaggttgagcgccccctgttggcctcacttACAATGTTACTTTCCTGTACAATGGAGATAATACTTTGAAGGTAAAGGAAAATATTCtgtgtgtttattcattcattcattttcttgtcggcttagtccctttattaattaaaccgccaacttatc
>TCONS_00061525
GTTATTTATTGCGCATGACGTGTGACGTATGTGTTTAGAGCGGGAACTTTTGGGGACGAAATGGAGCGTGAAGGTTTAACTCACACCGAGTTGTTGGtgtactactGTTCGGATGGAGAATTTAGGAGTTTTGTGTGCTTTACCTTCTCTTTGAGATTCCCAGCATATCCGAGGTACATCCGCAACACCTCGAATATACTGATCAGCACCATCCCTGTGACCAGAAGACACTGGTAATACACCGGCAGATAACTGAACTACAGGAACAGAGAAAGAAAAGCAGGTAGTGGTCTTTAAAGTCTGCGCTGTCTCTGGTCCTGTTGTTGATGAAGACAGAGCCGCTGACATTGGCCAGACCCACTCTCAGGTTCTGAGGGATCGGTGTGTAGAAGACAGGCATGATGGAcaacacaagcaaacacacattCAGTCCTACACACTCCTTTGCTGCAGTCAGATTAACAGGAGTCTTCAAGAGCTAACCGGATTAAACCCCAACAAACAGATGGAGTCTGACACTGGATTAAGATGTCGTCATCACTCAGAGtccAGAGTCTGTCCGTGTCTGCGGCTTTGAGAATCTGGACGTCATAACCAGCTGGAGGCTGCAGTACCAGCGCTGACCGGCGGGTGTCACAGCTCGTCCCGGGGCGCTCTGAGGGGGAAATGTTTGAACTCCTCCGGGACCTCCTCGCCTTTCTCTGACCTCTTGTAGAAACCCAGAGAATCCAGCAAACTGCTGATCTCATCTGCTTTCATCTTTTTCACAGGAACAACCTGAGATCGTTCTCTGCAGCCCTATGCAAGTCTCGAATGTCTAGATGACAGAAATCCCCCTTCAGTTTAAGTCTATGAGCTGAAATGGCTACCAGATGTGTATTCAGTGTGTTGCTGAACTCTACTGTGACGGAGCTCCAGGTCTGAAATGAGAGATGCCTTATATCCTCACCTTCATGGGGTACGCAGTAAACCGGCCCGTCTTCGCTGTTCTCGAAGGAAGAGAAAGATTCCTGGGATGACCATGACGGAGAAGGCTGGTCCACCACAGATGGAGGCTCGATGATACTGTTGAAGGTGTTTTCAGGATCGTGGTGGGTGACTAAGGGTTTGGACAAGGGGGAAACAAAACAGAGAGGTCAGGTCAAATCAGTGGAGGAATTTCTTTGGGTTTCTCTTTGCACAAAGTGCTCATTGACGACGTGTGATGATGTTTGGGCTCTACTGGAGTCCACTTTAGTGGCTGACTGGGGCAAATAGTGGAGCATGGAGAATCTGTATGAAAGCCAGCATTGACTGAGTGAAACATCAGACTTCAAAAGCTTGCTGGTATGGAATGATCTGCATGCCTCTGAAGACTTGGGAATTAGTTCTGGTGTGTACAGGTCAGGGTTAACACTGCTGTTTAAAGTTGGTTTGgtgctttttaaataacataGATGTGATCTGGTAAAATGAATGCACAGTCCCACCCAAATTTTATACCAACATAgacagttaataaaataatttttagttaaataaaatcagtacaaaatatcattacaaaacagttTTATGTAGGATATATTAACAACATATGTATAATATAAAGGTATATACAAATTAAAGATTGAATGTATTTTTCTTGTATAACACTGAAGCACATTTATACAGTTTGTTATATAATTCATAcagaatcatttatttatttatttatacagggacaatgtacaacatgacacgttgtgccagagttagctataaagctaatttacatctgtagtccctggaCAGGAAGTTGTAACaaatttgaattatatatatatatatatatatatatatatatatatggggcatTAGGagccacacagactgcaggttgagcgccccctgttggcctcacttACAATGTTACTTTCCTGTACAATGGAGATAATACTTTGAAGGTAAAGGAAAATATTCtgtgtgtttattcattcattcattttcttgtcggcttagtccctttattaattaaaccgccaacttatc
>TCONS_00061947
CGGGAACTTTTGGGGACGAAATGGAGCGTGAAGGTTTAACTCACACCGAGTTGTTGGtgtactactGTTCGGATGGAGAATTTAGGAGTTTTGTGTGCTTTACCTTCTCTTTGAGATTCCCAGCATATCCGAGGTACATCCGCAACACCTCGAATATACTGATCAGCACCATCCCTGTGACCAGAAGACACTGGTAATACACCGGCAGATAACTGAACTACAGGAACAGAGAAAGAAAAGCAGGTAGTGGTCTTTAAAGTCTGCGCTGTCTCTGGTCCTGTTGTTGATGAAGACAGAGCCGCTGACATTGGCCAGACCCACTCTCAGGTTCTGAGGGATCGGTGTGTAGAAGACAGGCATGATGGAcaacacaagcaaacacacattCAGTCCTACACACTCCTTTGCTGCAGTCAGATTAACAGGAGTCTTCAAGAGCTAACCGGATTAAACCCCAACAAACAGATGGAGTCTGACACTGGATTAAGATGTCGTCATCACTCAGAGAGTCTGTCCGTGTCTGCGGCTTTGAGAATCTGG
>TCONS_00061948
GGCTTTTTACACGTGTCCTGCAGAGGTTATTTATTGCGCATGACGTGTGACGTATGTGTTTAGAGCGGGAACTTTTGGGGACGAAATGGAGCGTGAAGGTTTAACTCACACCGAGTTGTTGGtgtactactGTTCGGATGGAGAATTTAGGAGTTTTGTGTGCTTTACCTTCTCTTTGAGATTCCCAGCATATCCGAGGTACATCCGCAACACCTCGAATATACTGATCAGCACCATCCCTGTGACCAGAAGACACTGGTAATACACCGGCAGATAACTGAACTACAGGAACAGAGAAAGAAAAGCAGACCTTTAACTGCAGCATCAGAAGCTCAGAGATCCACCAGAAGGGGAAGAAAAACATGTTGAAGTAGAGCATCATCTGTAGCGGGAGATGAGACGACACCTCCGCACACGCTAGACCACATCAGATTGTGTTTTGTTAGGTAGTGGTCTTTAAAGTCTGCGCTGTCTCTGGTCCTGTTGTTGATGAAGACAGAGCCGCTGACATTGGCCAGACCCACTCTCAGGTTCTGAGGGATCGGTGTGTAGAAGACAGGCATGATGGAcaacacaagcaaacacacattCAGTCCTACACACTCCTTTGCTGCAGTCAGATTAACAGGAGTCTTCAAGAGCTAACCGGATTAAACCCCAACAAACAGATGGAGTCTGACACTGGATTAAGATGTCGTCATCACTCAGAGAGTCTGTCCGTGTCTGCGGCTTTGAGAATCTGG

Function

GO:

id name namespace
GO:0000003 reproduction biological_process
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process
GO:0022414 reproductive process biological_process
GO:0007276 gamete generation biological_process
GO:0007281 germ cell development biological_process
GO:0048609 multicellular organismal reproductive process biological_process
GO:0032504 multicellular organism reproduction biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061946 False 1871 lncRNA 0.41 7 11356637 11466086
TCONS_00061526 False 1818 lncRNA 0.42 5 11356637 11466086
TCONS_00061525 False 2010 lncRNA 0.43 7 11356637 11466128
TCONS_00061947 False 540 lncRNA 0.48 4 11404107 11466088
TCONS_00061948 True 743 lncRNA 0.47 5 11404107 11466153

Neighbor

gene id symbol gene type direction distance location
XLOC_030868 CABZ01077121.1 coding downstream 73116 11278426 ~ 11283521 (-)
XLOC_030867 prodhb coding downstream 85428 11242291 ~ 11271209 (-)
XLOC_030866 NA coding downstream 318332 11037177 ~ 11038305 (-)
XLOC_030865 NA coding downstream 385036 10967799 ~ 10971601 (-)
XLOC_030864 rtn4r coding downstream 410258 10765611 ~ 10946379 (-)
XLOC_030870 CABP7 coding upstream 36425 11502578 ~ 11573490 (-)
XLOC_030871 NA coding upstream 110520 11576673 ~ 11663328 (-)
XLOC_030872 nf2a coding upstream 258275 11724428 ~ 11809710 (-)
XLOC_030873 fbxw8 coding upstream 398276 11864429 ~ 11905920 (-)
XLOC_030874 rnft2 coding upstream 450775 11916928 ~ 11944398 (-)
XLOC_030863 CR790366.3 non-coding downstream 631972 10720894 ~ 10724665 (-)
XLOC_030862 BX511089.3 non-coding downstream 847823 10507826 ~ 10508814 (-)
XLOC_030876 castor1 non-coding upstream 516211 11982364 ~ 12031921 (-)
XLOC_030880 CR735143.1 non-coding upstream 726745 12192898 ~ 12193014 (-)
XLOC_030881 BX276096.2 non-coding upstream 900056 12366209 ~ 12366325 (-)
XLOC_030888 NA non-coding upstream 1369373 12835526 ~ 12836607 (-)

Expression


Co-expression Network