G1189816


Basic Information

Item Value
gene id G1189816
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 57047988 ~ 57048481 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1357086
CAGTAAAAGCAATAAATGCAATATCTCCAGAGAGATGCTGAGTGTGCCTGCAGGCTGCAGGTAGGCATATGTGTTGCAACCAATGTTCCctaaaaaaatgtcaaatttcaggtctgctgagtgcaaacttCAACACTGTGAAAATGcagctgtacccgctttaagatCAGTTTTAACAATGGCCAAGTTACtatggctatttgatcataatgtaggccttcTAGattggcctaccatcaaaaacaatggagaaaatgcctCCCATAACATTTtgacatggaaatagctgttctatcattcagcctacagtaacaGACAATGTGtgttgttcaatgtaggcctacattctgagacttttgaaaaaaacatgcagggcttgacattaacctgtttatccatttgtccttcagacaaggtgactgttgttattgttgtttgatgcaagaaaccactttacaaaataaaatgcattattatacCCATACCATTGTTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1357086 True 494 lncRNA 0.38 1 57047988 57048481

Neighbor

gene id symbol gene type direction distance location
LOC110516169 LOC106601817 coding upstream 20248 57019702 ~ 57027741 (+)
LOC110517037 drc3 coding upstream 28741 57008000 ~ 57019247 (+)
LOC110486865 NA coding upstream 84971 56960598 ~ 56963017 (+)
LOC118938331 LOC106606599 coding upstream 128941 56688583 ~ 56926185 (+)
LOC118938096 NA coding upstream 368124 56678602 ~ 56679864 (+)
LOC110486862 LOC106606647 coding downstream 451 57048932 ~ 57053449 (+)
LOC110486876 rn151 coding downstream 37367 57085848 ~ 57089925 (+)
LOC110515850 rs2 coding downstream 41820 57090301 ~ 57092931 (+)
LOC118938613 NA coding downstream 42577 57091058 ~ 57091194 (+)
LOC110486871 rpl3l coding downstream 51721 57100202 ~ 57112612 (+)
G1189804 NA non-coding upstream 30288 57017476 ~ 57017700 (+)
G1189803 NA non-coding upstream 34142 57013576 ~ 57013846 (+)
G1189802 NA non-coding upstream 35071 57012691 ~ 57012917 (+)
G1189799 NA non-coding upstream 40725 57007040 ~ 57007263 (+)
G1189818 NA non-coding downstream 5679 57054160 ~ 57054390 (+)
G1189822 NA non-coding downstream 8487 57056968 ~ 57057222 (+)
G1189823 NA non-coding downstream 9069 57057550 ~ 57058011 (+)
G1189832 NA non-coding downstream 26104 57074585 ~ 57074861 (+)
G1189833 NA non-coding downstream 27387 57075868 ~ 57079580 (+)
G1189675 srebf1 other upstream 122381 56877928 ~ 56925607 (+)
G1189738 NA other upstream 210992 56836416 ~ 56836996 (+)
G1189040 NA other upstream 1108631 55938472 ~ 55939357 (+)
LOC110539040 LOC106601832 other upstream 1681672 55340702 ~ 55394765 (+)
G1188386 NA other upstream 1925369 55121261 ~ 55122619 (+)
G1189819 NA other downstream 5972 57054453 ~ 57055617 (+)
LOC110514101 LOC106606600 other downstream 547539 57522756 ~ 57640558 (+)
LOC110486909 LOC106601794 other downstream 575192 57613961 ~ 57625405 (+)
G1190568 NA other downstream 917035 57950494 ~ 57994502 (+)
G1190689 NA other downstream 992405 58040886 ~ 58041295 (+)

Expression


Co-expression Network