G1190260 (LOC106606635)


Basic Information

Item Value
gene id G1190260
gene name LOC106606635
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 57226941 ~ 57272116 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1357626
TGGAAGTCTTATGACTCATTTATTATAAAAATAGACTATCATTACAGGAACAACATGATCAGTACAGGAACTAAAGAATGCAAAAGTATTACAATAAAATAGCAGTAAAAGTTGCCTGGCGCCTGAAAAATAGGCATAGGCCCAATGCCATCAAATatgtaaaaacatatatatacaaTAGAGAATCAATTCAACATTTAAAagttgttaaaaaatatatattgtcaaTCTATAAAGAAAAATAGAATGTACAGCTAAAGACAATGAAATTCCATGCACAGCAATCAGTGCTATTTTCAAGTTAAATTGTGGTTGTAATTACAAGACTCAAATTCTCCCTGCTACGTCAGGGTCAAGGACTATAACGAACCTCTGTATGAACAACCATTTACAATGTGTGATGTCAGTcacatacaatgctgtgtacttaagtagctacagtatataggtaGCTTACCTTGAGGTTGAATGACTGACATAAGAGTACATCATTGATGCAAACCCTTGCTACTTAACACAACCTGAGAATATATCTTTCAAAGTCCTTCGTTGACATCATGTATTACAGTATGTTTACATAATTGTCTCTTAGTCAGCTGACATGAGCTTCCATTTGGACCCAAATTAAAGATGGCTGCCGTACATCATCAGTAACAAGCTGTCCGAAGGTCGTGCCCAAAGTAAAGATGGCTGCTGTGCAACACCCGTAGCAACCTGTCTTAGGTTGGTGCCCAAAGTAAAGATGGCTGCCGTGCAACATCACTAATAACCCATCTGGGGGGGGTGTGCACGTCTAATGGTGGTGCGCATGTCTTCATAGACATCGCTACTCTTGCTCTGTGTTGGTCTAATCGTTGCACGCCATGCCTTTAACCTGGGGATGACCCAGATGAAGAGGATGAGCAGACTCAGGAGAAGCACAGAGCCAGCAGTGACAGCTGAGACCAGGACTAGATACCAGGACATTCCTAGCCCTGAGGATGCGTCATTCTGGTCACACTCCTCATCATTCACCACCAGCAAAACAGCTCCTTCCCCCTCAGTCTTCTCAATCTTGTTTTTCTTATaaacactgtacacacaccagAAGGCCCCAGAGTCTTCTATGGTCAGGTTTGTGATGGTGATGTCCATTTTGTTGAGTCTTCCGTTAGTCGTCAATCTGAGTTTGAACCTCTCGTGGAGGATTAATTTTTTTGTTTCCTGGTGAAAGTAGAGGACTGCAATCTCTTTTGTTAGGCGCATGTACACACCCAGGTTTTCTTGGTCTGGCAGAGAGGTGCTGCAGTGGATGGTCATAGTGTCTCCCTCCTGCTTTCGGACCAGCAGTCCCTTGCTGCCTTTCATGAGCAGATGGGAGAATGGAAAAAAAAAc

Function

NR:

description
uncharacterized protein LOC110486897 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1357626 True 1375 lncRNA 0.42 3 57226941 57272116

Neighbor

gene id symbol gene type direction distance location
LOC110516439 LOC106601803 coding downstream 37622 57174996 ~ 57189319 (-)
LOC110486881 LOC106606582 coding downstream 62922 57161975 ~ 57164019 (-)
LOC110485244 LOC106601809 coding downstream 97499 57112909 ~ 57129442 (-)
nduba LOC106601814 coding downstream 127163 57094312 ~ 57099778 (-)
LOC110486894 LOC106601810 coding downstream 141420 57054453 ~ 57085521 (-)
LOC118936526 LOC106606576 coding upstream 335904 57598591 ~ 57612663 (-)
LOC118938332 LOC106606586 coding upstream 387791 57659907 ~ 57664396 (-)
LOC110486912 LOC106601792 coding upstream 394099 57666215 ~ 57697821 (-)
LOC110486915 LOC106606556 coding upstream 425943 57698059 ~ 57706813 (-)
LOC110486913 LOC106606569 coding upstream 435176 57707189 ~ 57727687 (-)
G1190281 NA non-coding downstream 7258 57218699 ~ 57219683 (-)
G1190243 NA non-coding downstream 73974 57152706 ~ 57152967 (-)
G1190242 NA non-coding downstream 74239 57152287 ~ 57152702 (-)
G1190191 NA non-coding downstream 134003 57090690 ~ 57092938 (-)
G1190225 NA non-coding downstream 149791 57076416 ~ 57077150 (-)
G1190307 NA non-coding upstream 8198 57280314 ~ 57281144 (-)
G1190386 NA non-coding upstream 184591 57456707 ~ 57459451 (-)
G1190419 NA non-coding upstream 266251 57538367 ~ 57538826 (-)
G1190199 LOC106601813 other downstream 137026 57089171 ~ 57089915 (-)
G1189660 LOC106601786 other downstream 552703 56670293 ~ 56674238 (-)
LOC110485237 LOC106606659 other downstream 1115957 56088292 ~ 56110984 (-)
G1189279 LOC106601786 other downstream 1311056 55912224 ~ 55915885 (-)
G1190405 NA other upstream 223872 57495988 ~ 57499155 (-)
G1190628 NA other upstream 694021 57964952 ~ 57994099 (-)
LOC110514412 NA other upstream 1315209 58561680 ~ 58588526 (-)
LOC110486955 NA other upstream 1324660 58588778 ~ 58603975 (-)

Expression


Co-expression Network