G1189866


Basic Information

Item Value
gene id G1189866
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 57276972 ~ 57278622 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1357145
CAACAAGCAACTGACCAGACCCACTCTAACCTGATTCAATAAGCAATTGACCAGACCCACTCTAACCTGATTCAACAAGCAACTGACCAGACCCACTCTAACCTGATTCAACAAGCAACTGACCAGACCCACTCTAACCTGATTCAATAAGCAATTGACCAGACCCACTCTAACCTGATTCAACAAGCAATTGACCAGACCCACTCTAACCTGATTCAATAAGCAATTGACCAGACACACTCTAACCTGATTCAATAAGCAATTGACCAGACCCACTCTAACCTGATTCAATAAGCAATTTACCATGGTCTTCAATTTAGACCATAAttattgaatcaggtgtgtataCACACTTCCTCCACAGTGTAGCTTTCTAAGGGAGATGTCATGTTATATAATTTGCTGTTAAATATGTTGTGGTGAGgttATGTTATGtggtgaaccattcacctctatgtctgggagtagaggatatgttatgtggtgaaccattcacctctatgtctgggagtagaggatatgttatgtggtgaaccattcacctctatgtctgggagtagaggatatgttatgtggtGAACAGTGGTGGAACAaatacccaactgtcatacttgagtaaaagtaaagataccctaatagaaaatgactcaagtcaaGGTGAAAGCcaaccagtaaaatactatttgagtaaaagtctaaaagtattttgttttaagtATACTTATTTATCAaaggtaaatgtaattgctaaaatataagtaatttcacattccttatattaagcaaaccagacggtacaatttaagtacttttgggtgtcagggaaaatgtatggagtaaaaagtacattattttctttaggaatgtagtgaagtaaaagtaatcaAAAATATAAAGAGTAAAGTACAAATAACTAAAaataactacttaagtagtactttaaagtatgtttacttaagcactttacaccactggtagagaaccattaaaaaaacattaaaaaaacaagaaaatggcgcc

Function

NR:

description
Spore coat assembly protein exsA

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1357145 True 1020 lncRNA 0.36 2 57276972 57278622

Neighbor

gene id symbol gene type direction distance location
LOC118936426 LOC106601799 coding upstream 4862 57267206 ~ 57272110 (+)
LOC110486898 NA coding upstream 15231 57250903 ~ 57261741 (+)
LOC118936313 LOC106606633 coding upstream 33120 57225575 ~ 57243852 (+)
LOC110486895 NA coding upstream 51609 57209985 ~ 57225363 (+)
LOC110486888 hn1 coding upstream 67073 57196436 ~ 57209899 (+)
LOC110516540 LOC106606577 coding downstream 24823 57303445 ~ 57459461 (+)
LOC110514101 LOC106606600 coding downstream 244134 57522756 ~ 57640558 (+)
LOC110486909 LOC106601794 coding downstream 335339 57613961 ~ 57625405 (+)
c13h17orf75 LOC106601793 coding downstream 359809 57638431 ~ 57655166 (+)
LOC110486914 LOC106606529 coding downstream 449567 57728189 ~ 57739064 (+)
G1189904 NA non-coding upstream 21800 57217534 ~ 57255172 (+)
G1189901 NA non-coding upstream 68045 57205873 ~ 57208927 (+)
LOC110486874 LOC106601805 non-coding upstream 120992 57149314 ~ 57155987 (+)
G1189840 NA non-coding upstream 168890 57107629 ~ 57108082 (+)
G1189833 NA non-coding upstream 197392 57075868 ~ 57079580 (+)
G1189949 NA non-coding downstream 53137 57331759 ~ 57367492 (+)
G1189978 NA non-coding downstream 136614 57415236 ~ 57416242 (+)
G1190014 NA non-coding downstream 233029 57511651 ~ 57516717 (+)
G1189819 NA other upstream 221355 57054453 ~ 57055617 (+)
G1189675 srebf1 other upstream 351365 56877928 ~ 56925607 (+)
G1189738 NA other upstream 439976 56836416 ~ 56836996 (+)
G1189040 NA other upstream 1337615 55938472 ~ 55939357 (+)
LOC110539040 LOC106601832 other upstream 1910656 55340702 ~ 55394765 (+)
G1190568 NA other downstream 686894 57950494 ~ 57994502 (+)
G1190689 NA other downstream 762264 58040886 ~ 58041295 (+)
LOC110538555 NA other downstream 1258205 58521363 ~ 58557066 (+)

Expression


Co-expression Network