G1190386


Basic Information

Item Value
gene id G1190386
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 57456707 ~ 57459451 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1357765
CAACTTTCATCTTTATTTCTTGAAAATAACACGATATCAAAAGGTAAATTCTGTTATTATTAATACCAGTACAAACATGTATCTGACAATGAATATACAGGACAGAGCATGATGACGATGATGTTTGGAAGCTGAGGATTATAGTTTGAAACTGAAACACATAAAACCTTTAAACACCACATATTACTGTTACTGGTTGATATCCAAGAAACggcagaagagaagaagagaaaagaaagtgggagaaagagagagaacttaGAGTTTTTAAGGAGGACTTTAGTTTCAGGGTGCACAGTCTGATATAAAGAGACTTGATAACAATGAAATGTCTTCTGCTGTGGTGATTGGCACCAGCTAGCACATCAGTAATAGGACAAGGAGTTTTCCAGACTATTTggcctgaccaggaaaaactcaggTCCCTGGTTATAGGCTATGGAGGTTtatcctggtcaggtcacatggtctggAAAAACCCAGGGACTTAATTGTCACGGTTGTCCTTCCAGTTTAAAAGCATGTGCTAGCGGACAGTCTCCAATAAATAAAAGGCAATAGTGTTGTCCAAGGCACAGAGACATGGCACATAGCTAGGACCAGGAGTTTTTCCCAAACACTTGACATGGGCAGTAGAAACTGATTTAGTGTTCTCTGCTCAGGACAACGATCATGTGTGGATGAGTGGGTGGGTGGTACACTTCTTATCTTTCTAATGTGCATAAATACTATTTATTTTAAATCACTCTTTAAACATCTGTATATAAAAACACCCCAAAATGACATCTATTATTTGGAATTGAAAAGGCACTGAGGGCATTTTGACATTTATTTTCTGACAGTAATACCTGTACGACGACGCAGCCATATAAAAATAACAATTACCACAATAGTATGAGGGATATGTATCGCTGTACTGTCACCAGCCCAAGGCTTAAAGCACTGGCTCCTCAAAGACAACAGGAGAGTGTTCCCCTCACTCTGCATCATACACGTGTAGGACCAGGagtttcctgaccatgtgacttTACCAGGAAAAACTCATGGTCCTAGTTACAGTCTATAACAACGATTCAGAGAAGACCCTAGTTACAGCCTATAACAACGACTCAAATACCCTAGTTACAGTCTATAACGACGACTCAGAGAATACTGTAGTTACAGCCGATAACAACGACTCAAAGACCCTAGTTACAGCCTATAACAACGACTCAAAAACCCTAGTTACAGTCTATAACGACGACTCAGAGAAGACTGTAGTTACAGTCTATAACGACAACTCAGAGAAGACCCTAGTTACAGTCTATAACTATGACTGAGAACGTCCTAGTTACAGGCTGTTACAAGGGCCCAAGGTTTTTTCTGGTCAGTTCAAGTTAtggggaaaaactcctggccctacagATGTGTCGACGATGTCCACTAGACTCAAAACCTCCAGTCCACCCCCGACATTATGTAACCCTGACATTATGCAATCCTGACCAATCCAACAGCATTATCAACTTCCATCACAATGAAACACTCCCCATTCACCATCTTCAACTGACCCCCCTCGGACATCATCAAACAGAACTCTGACAAATGAATCAACTGACATAGAATGAATAGATTTTATTTCTGTGTGTCATACTTCTAAATACTTAGCTGAATATCTGTCCTGTGCCTCTGCTGCTGTCGCGATGGATCCAGTACCACAGCTCTGGGGCCGAGTGTATAAAGcgcctcagagtaggagtgctgatctaggctcAGGTCtctctgtccatgtaatctttTACCTAAAAGGTAAAACTGATCccaaatcagcactcctactgggAATTAGAGTCCCTGAAGGCTAAACTACTCCCTCTCAAAGGGAACAGAAATAAATGTTGTAGAACCTTCAGATAGCAGGTCAAATGAACAATGAATGAAGGATGTATTACAGGGGCTATATTAAAACGGATGAGAAATCAATATTCTGTCACTGCTTGTATGTAATGGGACTGAAAACAGAGCGTTATTTTGTTAACCAACCCGACAGATGAGGGAACTAAAGAACGACAGAATAACTGAAAACACACAGATTAAGGTTGCAGTACATTAATAGTGTTTACTTAGCCTGGTTAAACCTGAATGAATGCAAGTGATAGCTAGCatttacccccccaccccccttcatGTAGACGTTAGTCAGAGAGACCGGGTGATCATCGAGGGGCAATGCATTGGCATCAACAGTCCATTCTATGCGTCTGTATTTGGCCATTTGGGGGCGCTAAGACTACACTCTCAGTCCCCCCAGTGTGGGTCTTCTCCCTTCTGTAGAAGGGTTTGGCATTGAGAgtgagtggaggggagagagggatggaaggataacGGGATGGAAGGATCGAAGCTGCTTTGGAAGGAAGTGAGGGCTCATGGGACACGATGGGCAGGGCTCTACATCTCATGGGAGGTCATGTGGTGTTGGGGGAGGCCGTTGGCATGGGCGACGGCGGTGTTGTTTTCGTTGAGGCGGCGGACGCGGTACACCTCATAGTGGATGCTGCTGGTGATGTCCTTGATGTTCTCCATGTGGgtcctgacagaggagagatgGGGCTAGTTAGACATCAGCTGAGGTCAACAGAGAGATAGTTAGACATCAGGTCAATATAAGGGGTTGTAATGATAAATGACACACAGACTGATTTacagacaaacatacacacacagactgaaagACACATTGTT
>TU1357766
CAACTTTCATCTTTATTTCTTGAAAATAACACGATATCAAAAGGTAAATTCTGTTATTATTAATACCAGTACAAACATGTATCTGACAATGAATATACAGGACAGAGCATGATGACGATGATGTTTGGAAGCTGAGGATTATAGTTTGAAACTGAAACACATAAAACCTTTAAACACCACATATTACTGTTACTGGTTGATATCCAAGAAACggcagaagagaagaagagaaaagaaagtgggagaaagagagagaacttaGAGTTTTTAAGGAGGACTTTAGTTTCAGGGTGCACAGTCTGATATAAAGAGACTTGATAACAATGAAATGTCTTCTGCTGTGGTGATTGGCACCAGCTAGCACATCAGTAATAGGACAAGGAGTTTTCCAGACTATTTggcctgaccaggaaaaactcaggTCCCTGGTTATAGGCTATGGAGGTTtatcctggtcaggtcacatggtctggAAAAACCCAGGGACTTAATTGTCACGGTTGTCCTTCCAGTTTAAAAGCATGTGCTAGCGGACAGTCTCCAATAAATAAAAGGCAATAGTGTTGTCCAAGGCACAGAGACATGGCACATAGCTAGGACCAGGAGTTTTTCCCAAACACTTGACATGGGCAGTAGAAACTGATTTAGTGTTCTCTGCTCAGGACAACGATCATGTGTGGATGAGTGGGTGGGTGGTACACTTCTTATCTTTCTAATGTGCATAAATACTATTTATTTTAAATCACTCTTTAAACATCTGTATATAAAAACACCCCAAAATGACATCTATTATTTGGAATTGAAAAGGCACTGAGGGCATTTTGACATTTATTTTCTGACAGTAATACCTGTACGACGACGCAGCCATATAAAAATAACAATTACCACAATAGTATGAGGGATATGTATCGCTGTACTGTCACCAGCCCAAGGCTTAAAGCACTGGCTCCTCAAAGACAACAGGAGAGTGTTCCCCTCACTCTGCATCATACACGTGTAGGACCAGGagtttcctgaccatgtgacttTACCAGGAAAAACTCATGGTCCTAGTTACAGTCTATAACAACGATTCAGAGAAGACCCTAGTTACAGCCTATAACAACGACTCAAATACCCTAGTTACAGTCTATAACGACGACTCAGAGAAGACCCTAGTTACAGCCTATAACAACGACTCAAAAACCCTAGTTACAGTCTATAACGACGACTCAGAGAAGACTGTAGTTACAGTCTATAACGACAACTCAGAGAAGACCCTAGTTACAGTCTATAACTATGACTGAGAACGTCCTAGTTACAGGCTGTTACAAGGGCCCAAGGTTTTTTCTGGTCAGTTCAAGTTAtggggaaaaactcctggccctacagATGTGTCGACGATGTCCACTAGACTCAAAACCTCCAGTCCACCCCCGACATTATGTAACCCTGACATTATGCAATCCTGACCAATCCAACAGCATTATCAACTTCCATCACAATGAAACACTCCCCATTCACCATCTTCAACTGACCCCCCTCGGACATCATCAAACAGAACTCTGACAAATGAATCAACTGACATAGAATGAATAGATTTTATTTCTGTGTGTCATACTTCTAAATACTTAGCTGAATATCTGTCCTGTGCCTCTGCTGCTGTCGCGATGGATCCAGTACCACAGCTCTGGGGCCGAGTGTATAAAGcgcctcagagtaggagtgctgatctaggctcAGGTCtctctgtccatgtaatctttTACCTAAAAGGTAAAACTGATCccaaatcagcactcctactgggAATTAGAGTCCCTGAAGGCTAAACTACTCCCTCTCAAAGGGAACAGAAATAAATGTTGTAGAACCTTCAGATAGCAGGTCAAATGAACAATGAATGAAGGATGTATTACAGGGGCTATATTAAAACGGATGAGAAATCAATATTCTGTCACTGCTTGTATGTAATGGGACTGAAAACAGAGCGTTATTTTGTTAACCAACCCGACAGATGAGGGAACTAAAGAACGACAGAATAACTGAAAACACACAGATTAAGGTTGCAGTACATTAATAGTGTTTACTTAGCCTGGTTAAACCTGAATGAATGCAAGTGATAGCTAGCatttacccccccaccccccttcatGTAGACGTTAGTCAGAGAGACCGGGTGATCATCGAGGGGCAATGCATTGGCATCAACAGTCCATTCTATGCGTCTGTATTTGGCCATTTGGGGGCGCTAAGACTACACTCTCAGTCCCCCCAGTGTGGGTCTTCTCCCTTCTGTAGAAGGGTTTGGCATTGAGAgtgagtggaggggagagagggatggaaggataacGGGATGGAAGGATCGAAGCTGCTTTGGAAGGAAGTGAGGGCTCATGGGACACGATGGGCAGGGCTCTACATCTCATGGGAGGTCATGTGGTGTTGGGGGAGGCCGTTGGCATGGGCGACGGCGGTGTTGTTTTCGTTGAGGCGGCGGACGCGGTACACCTCATAGTGGATGCTGCTGGTGATGTCCTTGATGTTCTCCATGTGGgtcctgacagaggagagatgGGGCTAGTTAGACATCAGCTGAGGTCAACAGAGAGATAGTTAGACATCAGGTCAATATAAGGGGTTGTAATGATAAATGACACACAGACTGATTTacagacaaacatacacacacagactgaaagACACATTGTT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1357765 False 2724 lncRNA 0.43 2 57456707 57459451
TU1357766 True 2691 lncRNA 0.43 3 57456707 57459451

Neighbor

gene id symbol gene type direction distance location
LOC110516439 LOC106601803 coding downstream 267388 57174996 ~ 57189319 (-)
LOC110486881 LOC106606582 coding downstream 292688 57161975 ~ 57164019 (-)
LOC110485244 LOC106601809 coding downstream 327265 57112909 ~ 57129442 (-)
nduba LOC106601814 coding downstream 356929 57094312 ~ 57099778 (-)
LOC110486894 LOC106601810 coding downstream 371186 57054453 ~ 57085521 (-)
LOC118936526 LOC106606576 coding upstream 148569 57598591 ~ 57612663 (-)
LOC118938332 LOC106606586 coding upstream 200456 57659907 ~ 57664396 (-)
LOC110486912 LOC106601792 coding upstream 206764 57666215 ~ 57697821 (-)
LOC110486915 LOC106606556 coding upstream 238608 57698059 ~ 57706813 (-)
LOC110486913 LOC106606569 coding upstream 247841 57707189 ~ 57727687 (-)
G1190303 NA non-coding downstream 171615 57264985 ~ 57285092 (-)
G1190307 NA non-coding downstream 175563 57280314 ~ 57281144 (-)
G1190260 LOC106606635 non-coding downstream 184591 57226941 ~ 57272116 (-)
G1190265 NA non-coding downstream 205969 57196433 ~ 57250738 (-)
G1190268 NA non-coding downstream 215279 57199592 ~ 57241428 (-)
G1190419 NA non-coding upstream 78916 57538367 ~ 57538826 (-)
G1190481 NA non-coding upstream 277894 57737345 ~ 57739055 (-)
G1190199 LOC106601813 other downstream 366792 57089171 ~ 57089915 (-)
G1189660 LOC106601786 other downstream 782469 56670293 ~ 56674238 (-)
LOC110485237 LOC106606659 other downstream 1345723 56088292 ~ 56110984 (-)
G1189279 LOC106601786 other downstream 1540822 55912224 ~ 55915885 (-)
G1190405 NA other upstream 36537 57495988 ~ 57499155 (-)
G1190628 NA other upstream 506686 57964952 ~ 57994099 (-)
LOC110514412 NA other upstream 1127874 58561680 ~ 58588526 (-)
LOC110486955 NA other upstream 1137325 58588778 ~ 58603975 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location