XLOC_030873 (fbxw8)


Basic Information

Item Value
gene id XLOC_030873
gene name fbxw8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 11864429 ~ 11905920 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060026
ATGCCAACAGCGGTAGAAACTCTGCAAGACTCTTGAGCgaatataatatttacaaatatgaatACAAACACAACGTGATTGAATGGGGACGGAAGAAGATGAGCTGTCGGTCTTCCGAGACCGGTGGAAACAGGAGTTAAATAAAAGCACGAAAGCCGCTAAAGAAAAAGAGGGATATTTTGGGGATCAAAATAAGGACGGTTCTTCTGTTCACCAAAGCACGAGTTTTTGGGAGAACCAGAGCAGTGTGTCACAGCCCACACCGAAGGAGCAGCCGGAGTATGTGTCTATCGCCGAGGGTTTGCTGGACGGCAGGAGCGGTCCATTGCTGGATAGGCTCGAGCACGAGAGAACGCGCACAAGGAAGCGCGCTCCCGAGATCGAGGCACCCAAAACAGACGCTCCCCCCAAAAAAGTGAACGCGAGCCAGAAATTGCTCGAGCAGTTCCTTCAGGACCTGAATGAGGTGAATGACATCCCATTCTTTGACGTGGAGTTGCCCTATGAGCTGGCGCTCAAGATCTTTAACTTCCTGGGCAGAACAGATCTTGGACGATGTGCTCAGGTGAGTAAATCCTGGAAGGTGCTTGCTGAAGATGAGCTTCTGTGGTATAGATTGTGTCTGGTGGAAGGTTTTCAAAAAGGTGCTAACATCTCTGACTCCCCCTGCTGGAAGAGCACCGTCAGAGACTGCCGCAACACAGAGAATGCAGTCAAATCCAACTGGAAGaatCGTGTTGGGTCCATTCGCCACCTGCAGTATGAACTAGGAAAGGTATTGTGTGATGTCAGTTCCTGTGCTGGTCTTGTAATTGCTGGCTATACATCTGGTGATGTTCGTCTGTGGGACACACTTCACTGGGACAAATTCTACCTAAAGCCCACACATTCCATCAGAAATGAAACCCCTGCGCCTTACGCTAGTCACGTACGGGTCAATAAGACCATAGCCGCAGCTGCTTATGAGAATGGGTGTGTGGATGTGTGGAGCACTGTTACCGGTCTTGAACCCATTCACCAGTACCAGCACCTCCAGAGGGTTCATGTACTGGATCTCAGCCCGGACGGTCCAGCTTTGGCCTCTGCATCAGGGCCAGATGTGCGGGTGGACGCCCCTGATGAGCAGGGCTACTGGAGATCTCAAAGCCTCGTTCAGTTACCAAAACCTGTTGATGGGGTGTTGGTGGTGCCAGGGAAGCGGGACATCCCCTTGGTCACTGCGTGGGCAGGTGAAAGCGTTTACCTGTTAAACTCAAGACCGGAGGAAGAACAGGAACCAAGGGTTCTTCACTCTGTATATGGACATCCAGTGACCTGTGTGGACACGTCACCCAGCAGAGCCGCTATGGGGATCAAGAGCTGCGGATGGGGCATGAATGATGGAGGCAATAAGATTCAAGTGTACGGCCTGGAGAGCGGCCAGTGTGAGCTGACCATGGGGAACTCGGCCGGAGACTTTACCTGCGTCAACCTGAGAGACAGCGGCCCTCACCTGCTGCTGTGCGGAAACAGAGACAGGCGAGTGAGAGTTTTTGACTTGCGGACTGGCTCATCGGTGCTCTCTTTATATGCTCATCACATGGGTGTCACAGCAGTCCAGGCAGATGATTGGAGGATTGTGAGTGGCGGAGGCGAGGGATTGGTCATTGTGTGGGAGATGAGGATAGGAGCCAAACTCTGGGAAATGCACAACAGacaCCCGGTTCGGCACATTCGGTTCAGCAGCAGCACACTGGTGACAGCCAACATCCCTGATGAGAAGAGTCCCCGCGGGGCCTGCATCACAGATGATGACCTCACCGCTCAccgcagatacCGAGGACTGATCTGTCATTATGATTTCTCCATGGACTCGTCCAGTCAGGATCACATTCTGCCCATCTGCAGGTCCAACTATGCCGAGTCCTCCGGCTACAACTATAACATCGGCTTGTCCATGCCTTACGACACACTGAGCGGCCCTTAGACTCCATGGGGCTCTTGGATGACTGGTATTGCTACCTAAGGACAATCTGGGGTCACATcgctttaaagtcattttaacagtAATGTATGTGTTTTATGGCTAGATTATAGATATATGCGTGGCTGTGTTAACAGGCCATTTCAAACACATGCCTTTGATTCTACATTTAGTTATTTTACTTATTGTATCATTTTCTGTGCCTGTACATTTTAGTGTACAGTGATATTAGATCTCCATTTAGGATGATAAAGAACACAAATGATGC

Function

symbol description
fbxw8 Predicted to be part of preribosome, large subunit precursor. Orthologous to human FBXW8 (F-box and WD repeat domain containing 8).

GO:

id name namespace
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-080204-111 Predicted to be part of preribosome, large subunit precursor. Orthologous to human FBXW8 (F-box and WD repeat domain containing 8).

Ensembl:

ensembl_id ENSDARG00000079089

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060026 True 2231 mRNA 0.50 11 11864429 11905920

Neighbor

gene id symbol gene type direction distance location
XLOC_030872 nf2a coding downstream 54719 11724428 ~ 11809710 (-)
XLOC_030871 NA coding downstream 201101 11576673 ~ 11663328 (-)
XLOC_030870 CABP7 coding downstream 290939 11502578 ~ 11573490 (-)
XLOC_030869 NA coding downstream 398276 11356637 ~ 11466153 (-)
XLOC_030868 CABZ01077121.1 coding downstream 580908 11278426 ~ 11283521 (-)
XLOC_030874 rnft2 coding upstream 11008 11916928 ~ 11944398 (-)
XLOC_030875 osm coding upstream 59193 11965113 ~ 11971946 (-)
XLOC_030876 castor1 coding upstream 76444 11982364 ~ 12031921 (-)
XLOC_030877 nipsnap1 coding upstream 126882 12032802 ~ 12063381 (-)
XLOC_030878 lrrc74b coding upstream 160037 12065957 ~ 12093618 (-)
XLOC_030866 NA non-coding downstream 826124 11037177 ~ 11038305 (-)
XLOC_030865 NA non-coding downstream 892828 10967799 ~ 10971601 (-)
XLOC_030880 CR735143.1 non-coding upstream 286978 12192898 ~ 12193014 (-)
XLOC_030881 BX276096.2 non-coding upstream 460289 12366209 ~ 12366325 (-)
XLOC_030888 NA non-coding upstream 929606 12835526 ~ 12836607 (-)
XLOC_030893 NA non-coding upstream 1371321 13277241 ~ 13306705 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000071_05167170_05195192 FBXW8 coding CI01000071 null 5166427 ~ 5195429 (+)