G1190481


Basic Information

Item Value
gene id G1190481
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 57737345 ~ 57739055 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1357877
CACCCTTTTAATTCAACAGAATATTGCTGCTGGTGGTCATTTTATTCACAAAACCAACACTGTGCCTTGCAAAATGCAGACTCCAATACAGTGCCCAAGCTGCCATTCTTCCTCAAGAGTTAGTGATTCAACAggtctgggtcatgttcatttggGCACACAGTACCAAAACCTTTTGCAACAGACAATTTGtacttattggacaagtccaggtagtccctccctgtttcagtctgttagTCCCTTATGAATACAACCCTGAGGTTAACAACCTCAACAACCATAAATTGCCATCTTACTCATGACTTCAACCATAGCTTATTCCAGTGCAACCTTAACTCACTCTgaatagggccaggagtttttccctgACCAGGGACCCtagttagggttgcaaaattctgtgaactttcaataaattccctggttttccagaaattcgAGTTGGAGGATTCTGGATTTCATGCTTATTTCCTCCTGATTCTGGGAATCCTCCTACTGGTATttcagggaatttattgaaagttcctggaATTTTGCAAGCAGCCCCGTTTAAAGCCTATAACTATGGCCACAGGTTTTTCCCTGGGCAGGGATAACGTCTGTCCCCAATGACCATCAGAAGGTGATCTAACTGGTGGGAGGTCAGGACATCTTTTATTGGAACTTTATTCAAAACaattgaaaaataaaaaacaaaaacatacaatGTAGAAGACCATGTCACAGATCAAGGAAAACTAAAACTTCTAACACCATTCGTCTCCCGTGCAACAGGTTGAGTTAAACAGACTAGTGTTATGTGATGTATGCAGTAGGTAACTTCCCACTGTAGATGTACCCGTGGTTATGTTAACTAGCATTCCACAATCACTGAAGTCTTCCGCTgtgcaaacacacaaagacactcATACAGACACTCACGTTTATCGTAAGTTGTGGGGACACATTCTAAATactgtagtcacacacacacagagagaaaacaaaaatataattcacGGAACATAAAATCCAAACCAAAGCTCAAAATGTATGAAGACCAAGCAACTTAGGCGATGGGAATGTTCCAAATGAAGGAGAAATCAAACTACCAAGCAATTAAAATAATCACCTTTAAAAGCAAAACCTCCCACTCTTAATCATTTTACCATTAACGTAATTGATTGTAATCTTTATAAATCAATGTTAATTTCAGTAAATGCAGTATTAGTAGTGTAGGACTAGAAGTAAGTCACTTGAATAGACAGTTTGGCTGTggtaaatacaattaaaaaaggGGAAAGTGGGATTTCATTGGGTGAGTGATGAGCATTTCCGGAAGTAAATCTGGCTTTCATGGTTTCGAGTTCAAATCTCCCAAGTTCATGTTTTTATTGACAGATAAAACAAGGGAAGATTTCAGGGAACCAAAATGAAAGATAACAGTCCCTAGAAATCCATCCCATTATTCAGCTCACAGGCAAAGCAATAGTTTGTTCTCTTCGCATATTTATTTAAACAAGTGGTGAGTTGgacagggaaaggggagggaCAGGGAAAGGACTGCCAGCTCAGAATCCCTTcagaacaaaaaatatataattttttatttatttttttaaatggcccGGATTCTGTTGACTGGTTGGGTTAAGTGGTAGTAGCCTTTCTTTATTCTCGCTCTTTATGAGTCTCAGCCGAGCCTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1357877 True 1689 lncRNA 0.39 2 57737345 57739055

Neighbor

gene id symbol gene type direction distance location
LOC110486913 LOC106606569 coding downstream 9658 57707189 ~ 57727687 (-)
LOC110486915 LOC106606556 coding downstream 30532 57698059 ~ 57706813 (-)
LOC110486912 LOC106601792 coding downstream 39524 57666215 ~ 57697821 (-)
LOC118938332 LOC106606586 coding downstream 72949 57659907 ~ 57664396 (-)
LOC118936526 LOC106606576 coding downstream 124682 57598591 ~ 57612663 (-)
rfx1a rfx1 coding upstream 5935 57744990 ~ 57768073 (-)
LOC110486935 LOC106606473 coding upstream 106731 57845786 ~ 57848186 (-)
LOC110486920 LOC106606537 coding upstream 158111 57897166 ~ 57955613 (-)
LOC118938684 NA coding upstream 228494 57967549 ~ 57967702 (-)
LOC118938640 NA coding upstream 229218 57968273 ~ 57970108 (-)
G1190419 NA non-coding downstream 198519 57538367 ~ 57538826 (-)
G1190386 NA non-coding downstream 277894 57456707 ~ 57459451 (-)
G1190580 NA non-coding upstream 62190 57801245 ~ 57801960 (-)
G1190578 NA non-coding upstream 66925 57805980 ~ 57806220 (-)
G1190583 NA non-coding upstream 67913 57806968 ~ 57807576 (-)
G1190616 NA non-coding upstream 146522 57885577 ~ 57885846 (-)
G1190405 NA other downstream 238190 57495988 ~ 57499155 (-)
G1190199 LOC106601813 other downstream 647430 57089171 ~ 57089915 (-)
LOC110486894 LOC106601810 other downstream 651874 57054453 ~ 57085521 (-)
G1189660 LOC106601786 other downstream 1063107 56670293 ~ 56674238 (-)
G1190628 NA other upstream 227082 57964952 ~ 57994099 (-)
LOC110514412 NA other upstream 848270 58561680 ~ 58588526 (-)
LOC110486955 NA other upstream 857721 58588778 ~ 58603975 (-)
G1191298 LOC106606554 other upstream 1020668 58759723 ~ 58762086 (-)
G1191335 NA other upstream 1129008 58868063 ~ 58868971 (-)

Expression


Co-expression Network