XLOC_030874 (rnft2)


Basic Information

Item Value
gene id XLOC_030874
gene name rnft2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 11916928 ~ 11944398 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060027
AAAGCGGTTCACATCCGCTCTACAGTCACTGATTGATGCTTTAATTTTTCTGGCGTTTGTTAAAAGAAATAGCTCATAAAAAAGCGATTAGATAGTCGTTTATCGGTTTCCGTTAAAAGCTATGATGAAGTTTTGGAGCTCCTGGTGATAAAGCGGGTGCCATGCAGAGACGCCACAGCAGTAATACTGAGGGCATGCCACCAGAAAGGAACAGGAGTCAGACTCTGGGTTCAGAGAGCAGTCTTGATGAAGGAGGAGTGTTTGACTGTCTGAAGCCAGACTCTCCCACGTCTCCCCAGCAGCTCTTCTCTGGTCTGGTGGGCGTCTCTGCTGGAAACGTGTCTTCAGCTCCCTTCCAGGCTGCAGGGCTGGTTCTGGGTTCTCCTCCAGACGTCTTCATCCAGATGGCATCCTCCACCCGGGACGAAGCCTCCTCGCACCGAACGGAAAACCCTCCTTATCTTCCTCGCCCTTCTCAgcaccatcatcaccatcatcaccaccatcatcacTCTGGTCAACACCGCTCTGCTCTCCTGCATGCGGCCACCTCTGCTGAGAGACACAGCAGCAGAGAGGACGGAGGCGAAGATGCCTCTACTCCAGCTCCTGCTCTCTCTGAACTCAAGGCTGTGGTCACATGGCTTCAGAGAGGATTCCCTTTTATCCTCATTCTCCTCGCTAAAGTCTGCTTTCAGCACAAGCTCGgaattgctGTTTGCATCGGAATGATCAGCACATTTGCCTTTGCAAACTCAACACTGAAGCATCAGGTGGCACTGCGGGAGGAGAGGTCTGTGTTTACCACCCTCTGGATTATGGTGTTTCTCGCTGGGAACATTGTGTATGTGTACTATACCTTCAGTACTGAGGAACTTCACAACAGCCTTATTTTTGCCAAGCCAAACATCAACAGTTTTGACTTCTTTGACCTGATCTGGGCTGTTGGAATAACAGATTTTGTGCTGAAGTATTTCACCATCGAGCTCAAATGCTTCATACTCTTCCTGCCTAAAATGATCCTCGCCTTCAAGTCTAGGGGGAAGTTTTATCTGCTGATAGAAGAGCTGAGTCAACTCTTCAGAGCACTAGTTCCAATCCAGCTGTGGTACAAGTACATCATGGGTGAAGATCCATCCAGCAGCTACTTCCTCGGAGCAATGCTGATTATCATCTACAGCCTTTGTAAGTCATTTGATTTGTGTGGAAGAATATCTGGCATTCGAAAAGCATTCATTATTCTCTGTAGCTCACAGAATTATGGTATGAGAGCCAGCGCTCAGCAGTGCGGTGAAGCTGGGGATGTGTGTGCGATCTGCCAGGCTGAATTCAGAGAGCCAGTCGCTCTGCTCTGTCAGCATGTGTTCTGTGAGGAGTGTTTATGCCTGTGGTTTGACCGTGAGAGGACGTGTCCACTGTGTCGGTCGACGGTGGTGGAAACTCTACGTAACTGGAAGGACGGGACAACATCGGCACACTTTCAGATCTACTGATGGGAGACGCTGCTGAATGACAGAGGTTATCTAGTATATTGAGTCATATTATCATACCTTTTTACCATGGAGAAAATGTTTGTTTGCTGCTTGTTTCACATTTCAAGCTGCACATATTTTACCTGACCTAAGGATTGACTTTGGGTATTCCTTCATTTCTAGATGAGTCCAAATTATACAACATAAACATAACCAGGAACTTGTTCACATCAATGCATTTTTGatagtttacatgcatttttagGAACGGATCATGCAATCTCTGGTATGTTTCTAATGTGAATGTAATCATACTAGTTCATGGAAGTGAACCGCTAATAATGACAGGTGATTCTGCATAAAAAGTGTAAATGAGCTGCCACAAGTAGAGGGAATATGTATGATTTTTCTGAGAGAGCCCCAATTACAAGTGTGAAACATACTTTGGGATAAAAGTGGTGTAAGAGTGAGTGTACAAAATAAGTGGTAATAGGTTATGTTGTTGAATGTGATGTACAATAGCACCAATAATTTAATACCAGACTGAAAGTGTTAGTTTTTTTGCTTTTCAACAAGTGAAGTATCTGTTTTTAATACGCAAGCATGATAATCAACTGTTTTGTAACACTTCTTGAGTTAATTCAAGCAATTAAACTCAATTTGGAAGC
>TCONS_00060028
ATGAGCGACAATCCGAACACGACCCCCAGGACCCAACGCTTGCGCAGGAGCCGGCGCAACACCATGGAGGCGTTCTTCTGGATGTGCACCAGGTCCAGTTTTGGAGCTCCTGGTGATAAAGCGGGTGCCATGCAGAGACGCCACAGCAGTAATACTGAGGGCATGCCACCAGAAAGGAACAGGAGTCAGACTCTGGGTTCAGAGAGCAGTCTTGATGAAGGAGGAGTGTTTGACTGTCTGAAGCCAGACTCTCCCACGTCTCCCCAGCAGCTCTTCTCTGGTCTGGTGGGCGTCTCTGCTGGAAACGTGTCTTCAGCTCCCTTCCAGGCTGCAGGGCTGGTTCTGGGTTCTCCTCCAGACGTCTTCATCCAGATGGCATCCTCCACCCGGGACGAAGCCTCCTCGCACCGAACGGAAAACCCTCCTTATCTTCCTCGCCCTTCTCAgcaccatcatcaccatcatcaccaccatcatcacTCTGGTCAACACCGCTCTGCTCTCCTGCATGCGGCCACCTCTGCTGAGAGACACAGCAGCAGAGAGGACGGAGGCGAAGATGCCTCTACTCCAGCTCCTGCTCTCTCTGAACTCAAGGCTGTGGTCACATGGCTTCAGAGAGGATTCCCTTTTATCCTCATTCTCCTCGCTAAAGTCTGCTTTCAGCACAAGCTCGgaattgctGTTTGCATCGGAATGATCAGCACATTTGCCTTTGCAAACTCAACACTGAAGCATCAGGTGGCACTGCGGGAGGAGAGGTCTGTGTTTACCACCCTCTGGATTATGGTGTTTCTCGCTGGGAACATTGTGTATGTGTACTATACCTTCAGTACTGAGGAACTTCACAACAGCCTTATTTTTGCCAAGCCAAACATCAACAGTTTTGACTTCTTTGACCTGATCTGGGCTGTTGGAATAACAGATTTTGTGCTGAAGTATTTCACCATCGAGCTCAAATGCTTCATACTCTTCCTGCCTAAAATGATCCTCGCCTTCAAGTCTAGGGGGAAGTTTTATCTGCTGATAGAAGAGCTGAGTCAACTCTTCAGAGCACTAGTTCCAATCCAGCTGTGGTACAAGTACATCATGGGTGAAGATCCATCCAGCAGCTACTTCCTCGGAGCAATGCTGATTATCATCTACAGCCTTTGTAAGTCATTTGATTTGTGTGGAAGAATATCTGGCATTCGAAAAGCATTCATTATTCTCTGTAGCTCACAGAATTATGGTATGAGAGCCAGCGCTCAGCAGTGCGGTGAAGCTGGGGATGTGTGTGCGATCTGCCAGGCTGAATTCAGAGAGCCAGTCGCTCTGCTCTGTCAGCATGTGTTCTGTGAGGAGTGTTTATGCCTGTGGTTTGACCGTGAGAGGACGTGTCCACTGTGTCGGTCGACGGTGGTGGAAACTCTACGTAACTGGAAGGACGGGACAACATCGGCACACTTTCAGATCTACTGA
>TCONS_00060029
GCTTGCGCAGGAGCCGGCGCAACACCATGGAGGCGTTCTTCTGGATGTGCACCAGGTCCAGTTTTGGAGCTCCTGGTGATAAAGCGGGTGCCATGCAGAGACGCCACAGCAGTAATACTGAGGGCATGCCACCAGAAAGGAACAGGAGTCAGACTCTGGGTTCAGAGAGCAGTCTTGATGAAGGAGGAGTGTTTGACTGTCTGAAGCCAGACTCTCCCACGTCTCCCCAGCAGCTCTTC

Function

symbol description
rnft2 Predicted to enable ubiquitin protein ligase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RNFT2 (ring finger protein, transmembrane 2).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-168 Predicted to enable ubiquitin protein ligase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RNFT2 (ring finger protein, transmembrane 2).

Ensembl:

ensembl_id ENSDARG00000053019

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060027 False 2140 mRNA 0.45 11 11916928 11943750
TCONS_00060028 False 1461 mRNA 0.51 11 11917575 11944398
TCONS_00060029 True 239 mRNA 0.56 3 11942162 11944361

Neighbor

gene id symbol gene type direction distance location
XLOC_030873 fbxw8 coding downstream 11008 11864429 ~ 11905920 (-)
XLOC_030872 nf2a coding downstream 107218 11724428 ~ 11809710 (-)
XLOC_030871 NA coding downstream 253600 11576673 ~ 11663328 (-)
XLOC_030870 CABP7 coding downstream 343438 11502578 ~ 11573490 (-)
XLOC_030869 NA coding downstream 450775 11356637 ~ 11466153 (-)
XLOC_030875 osm coding upstream 20715 11965113 ~ 11971946 (-)
XLOC_030876 castor1 coding upstream 37966 11982364 ~ 12031921 (-)
XLOC_030877 nipsnap1 coding upstream 88404 12032802 ~ 12063381 (-)
XLOC_030878 lrrc74b coding upstream 121559 12065957 ~ 12093618 (-)
XLOC_030879 nos1 coding upstream 155728 12100126 ~ 12525441 (-)
XLOC_030868 CABZ01077121.1 non-coding downstream 633407 11278426 ~ 11283521 (-)
XLOC_030866 NA non-coding downstream 878623 11037177 ~ 11038305 (-)
XLOC_030865 NA non-coding downstream 945327 10967799 ~ 10971601 (-)
XLOC_030880 CR735143.1 non-coding upstream 248500 12192898 ~ 12193014 (-)
XLOC_030881 BX276096.2 non-coding upstream 421811 12366209 ~ 12366325 (-)
XLOC_030888 NA non-coding upstream 891128 12835526 ~ 12836607 (-)
XLOC_030893 NA non-coding upstream 1332843 13277241 ~ 13306705 (-)

Expression


Co-expression Network