G1190628


Basic Information

Item Value
gene id G1190628
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 57964952 ~ 57994099 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1358097
accgttgagaggtaaacgggtggggtccgcgcagtctgcccggaggattcaactcggcgggtcagggtcggccgttccggtgtggtcggatcccctcgtgggactgatccctggtcgggctcggcccccgccgggcgcatttcctctgtcggtggtgcgccgcgaccggctctgggtcggcttggaagggcttggggcgaaggtggctaccggtttcggccgtgagctttacagcgcccctgctccgtactcgccgctttccggggccgaggacttagtacccgctgcgtcatgtccccctgcgggggggcacggggccccttgcccccggcgcgactgtcaaccgggtcggactgtcctcagtgcgtacccaaccgcgttgcgtcgccagggtagggatcggctcacgtcaactggcgccaggggtcagcggcgatgtcggcaacccacccgacccgtcttgagaggtaaacgggtggggtccgcgcagtctgcccggaggattcaactcggcgggtcagggtcggccgttccggtgtggtcggatcccctcgtgggactgatccctggtcgggctcggcccccgccgggcgcatttcctctgtcggtggtgcgccgcgaccggctctgggtcggcttggaagggcttggggcgaaggtggctaccggtttcggccgtgagctttacagcgcccctgctccgtactcgccgctttccggggccgaggacttagtacccgctgcgtcatgtccccctgcgggggggcacggggccccttgcccccggcgcgactgtcaaccgggtcggactgtcctcagtgcgtacccaaccgcgttgcgtcgccagggtagggatcggctcacgtcaactggcgccaggggtcagcggcgtccggtgagctctcgctggcccttgaaaatccgggggagagggtgtaaatctcgcgccgggccgtacccatatccgcagcaggtctccaaggtgaacagcctctggcatgttagaacaatgtatgtaagggtt
>TU1358092
accgttgagaggtaaacgggtggggtccgcgcagtctgcccggaggattcaactcggcgggtcagggtcggccgttccggtgtggtcggatcccctcgtgggactgatccctggtcgggctcggcccccgccgggcgcatttcctctgtcggtggtgcgccgcgaccggctctgggtcggcttggaagggcttggggcgaaggtggctaccggtttcggccgtgagctttacagcgcccctgctccgtactcgccgctttccggggccgaggacttagtacccgctgcgtcatgtccccctgcgggggggcacggggccccttgcccccggcgcgactgtcaaccgggtcggactgtcctcagtgcgtacccaaccgcgttgcgtcgccagggtagggatcggctcacgtcaactggcgccaggggtcagcggcgatcaactcggcgggtcagggtcggccgttccggtgtggtcggatcccctcgtgggactgatccctggtcgggctcggcccccgccgggcgcatttcctctgtcggtggtgcgccgcgaccggctctgggtcggcttggaagggcttggggcgaaggtggctaccggtttcggccgtgagctttacagcgcccctgctccgtactcgccgctttccggggccgaggacttagtacccgctgcgtcatgtccccctgcgggggggcacggggccccttgcccccggcgcgactgtcaaccgggtcggactgtcctcagtgcgtacccaaccgcgttgcgtcgccagggtagggatcggctcacgtcaactggcgccaggggtcagcggcgatcgaagagggaagagcccaacaccgaatccctgtccgtctggcgggcacgggaaatgtggtgtatagaagaccgctttgcccggtgtcgatcgggggcctgagtccttctgatcgaggctcagcccgtggacggtgtgaggccggtaacggcccccgtcgcgccggggtccggtcttttcagagtcgggttgcttgggaatgcagcccaaagcgggtggtaaactccatctaaggctaaataccgtcacgagaccgatagacgacaagtaccgtaagggaaagttgaaaagaactttgaagagagagttcaagagggcgtgaaaccgttgagaggtaaacgggtggggtccgcgcagtctgcccggaggattcaactcggcgggtcagggtcggccgttccggtgtggtcggatcccctcgtgggactgatccctggtcgggctcggcccccgccgggcgcatttcctctgtcggtggtgcgccgcgaccggctctgggtcggcttggaagggcttggggcgaaggtggctaccggtttcggccgtgagctttacagcgcccctgctccgtactcgccgctttccggggccgaggacttagtacccgctgcgtcatgtccccctgcgggggggcacggggccccttgcccccggcgcgactgtcaaccgggtcggactgtcctcagtgcgtacccaaccgcgttgcgtcgccagggtagggatcggctcacgtcaactggcgccaggggtcagcggcgatgtcggcaacccacccgacccgtcttgaaacacggaccaaggagtctaacgcatgcgcaagtcagagggttttctccgaacacaccccgtggcgcaatgaaagtgagggccggcgcgtgtcggctgaggtgggatcccgaccctacggggtcgggcgcaccaccggcccgtctcgcccgctttgtcg
>TU1358101
accgttgagaggtaaacgggtggggtccgcgcagtctgcccggaggattcaactcggcgggtcagggtcggccgttccggtgtggtcggatcccctcgtgggactgatccctggtcgggctcggcccccgccgggcgcatttcctctgtcggtggtgcgccgcgaccggctctgggtcggcttggaagggcttggggcgaaggtggctaccggtttcggccgtgagctttacagcgcccctgctccgtactcgccgctttccggggccgaggacttagtacccgctgcgtcatgtccccctgcgggggggcacggggccccttgcccccggcgcgactgtcaaccgggtcggactgtcctcagtgcgtacccaaccgcgttgcgtcgccagggtagggatcggctcacgtcaactggcgccaggggtccgttccggtgtggtcggatcccctcgtgggactgatccctggtcgggctcggcccccgccgggcgcatttcctctgtcggtggtgcgccgcgaccggctctgggtcggcttggaagggcttggggcgaaggtggctaccggtttcggccgtgagctttacagcgcccctgctccgtactcgccgctttccggggccgaggacttagtacccgctgcgtcatgtccccctgcgggggggcacggggccccttgcccccggcgcgactgtcaaccgggtcggactgtcctcagtgcgtacccaaccgcgttgcgtcgccagggtagggatcggctcacgtcaactggcgccaggggtcagcggcgatgtcggcaacccacccgacccgtcttgaaacacggaccaaggagtctaacgcatgcgcaagtcagagggttttctccgaacacaccccgtggcgcaatgaaagtgagggccggcgcgtgtcggctgaggtgggatcccgaccctacggggtcgggcgcaccaccggcccgtctcgcccgctttgtcg
>TU1358104
tccggtgtggtcggatcccctcgtgggactgatccctggtcgggctcggcccccgccgggcgcatttcctctgtcggtggtgcgccgcgaccggctctgggtcggcttggaagggcttggggcgaaggtggctaccggtttcggccgtgagctttacagcgcccctgctccgtactcgccgctttccggggccgaggacttagtacccgctgcgtcatgtccccctgcgggggggcacggggccccttgcccccggcgcgactgtcaaccgggtcggactgtcctcagtgcgtacccaaccgcgttgcgtcgccagggtagggatcggctcacgtcaactggcgccaggggtcagcggcgatgtcggcaaccgtagcgccgtggagcttcggttggcccgggatagcctgcctcttttggcaggtgagtagagccgttcgtgacagggtcggggtgcggccgaatgagttgccgcccctctcctgatgcgcaccgcatgtttgtggatcccctcgtgggactgatccctggtcgggctcggcccccgccgggcgcatttcctctgtcggtggtgcgccgcgaccggctctgggtcggcttggaagggcttggggcgaaggtggctaccggtttcggccgtgagctttacagcgcccctgctccgtactcgccgctttccggggccgaggacttagtacccgctgcgtcatgtccccctgcgggggggcacggggccccttgcccccggcgcgactgtcaaccgggtcggactgtcctcagtgcgtacccaaccgcgttgcgtcgccagggtagggatcggctcacgtcaactggcgccaggggtcagcggcgatgtcggcgcagtctgcccggaggattcaactcggcgggtcagggtcggccgttccggtgtggtcggatcccctcgtgggactgatccctggtcgggctcggcccccgccgggcgcatttcctctgtcggtggtgcgccgcgaccggctctgggtcggcttggaagggcttggggcgaaggtggctaccggtttcggccgtgagctttacagcgcccctgctccgtactcgccgctttccggggccgaggacttagtacccgctgcgtcatgtccccctgcgggggggcacggggccccttgcccccggcgcgactgtcaaccgggtcggactgtcctcagtgcgtacccaaccgcgttgcgtcgccagggtagggatcggctcacgtcaactggcgccaggggtcagcggcgatgtcggcaacccacccgacccgtcttgaaacacggaccaaggagtctaacgcatgcgcaagtcagagggttttctccgaacacaccccgtggcgcaatgaaagtgagggccggcgcgtgtcggctgaggtgggatcccgaccctacggggtcgggcgcaccaccggcccgtctcgcccgctttgtcg
>TU1358098
ttcaactcggcgggtcagggtcggccgttccggtgtggtcggatcccctcgtgggactgatccctggtcgggctcggcccccgccgggcgcatttcctctgtcggtggtgcgccgcgaccggctctgggtcggcttggaagggcttggggcgaaggtggctaccggtttcggccgtgagctttacagcgcccctgctccgtactcgccgctttccggggccgaggacttagtacccgctgcgtcatgtccccctgcgggggggcacggggccccttgcccccggcgcgactgtcaaccgggtcggactgtcctcagtgcgtacccaaccgcgttgcgtcgccagggtagggatcggctcacgtcaactggcgccaggggtcagcggcgatgtcggcaacagtctgcccggaggattcaactcggcgggtcagggtcggccgttccggtgtggtcggatcccctcgtgggactgatccctggtcgggctcggcccccgccgggcgcatttcctctgtcggtggtgcgccgcgaccggctctgggtcggcttggaagggcttggggcgaaggtggctaccggtttcggccgtgagctttacagcgcccctgctccgtactcgccgctttccggggccgaggacttagtacccgctgcgtcatgtccccctgcgggggggcacggggccccttgcccccggcgcgactgtcaaccgggtcggactgtcctcagtgcgtacccaaccgcgttgcgtcgccagggtagggatcggctcacgtcaactggcgccaggggtcagcggcgatgtcggcaacccacccgacccgtcttgaaacacggaccaaggagtctaacgcatgcgcaagtcagagggttttctccgaacacaccccgtggcgcaatgaaagtgagggccggcgcgtgtcggctgaggtgaaattcttggaccggcgcaagacggacgaaagcgaaag
>TU1358096
agtaccgtaagggaaagttgaaaagaactttgaagagagagttcaagagggcgtgaaaccgttgagaggtaaacgggtggggtccgcgcagtctgcccggaggattcaactcggcgggtcagggtcggccgttccggtgtggtcggatcccctcgtgggactgatccctggtcgggctcggcccccgccgggcgcatttcctctgtcggtggtgcgccgcgaccggctctgggtcggcttggaagggcttggggcgaaggtggctaccggtttcggccgtgagctttacagcgcccctgctccgtactcgccgctttccggggccgaggacttagtacccgctgcgtcatgtccccctgcgggggggcacggggccccttgcccccggcgcgactgtcaaccgggtcggactgtcctcagtgcgtacccaaccgcgttgcgtcgccagggtagggatcggctcacgtcaactggcgccaggggtcagcggcgatgtcggcaacccacccgaccctgcctcttttggcaggtgagtagagccgttcgtgacagggtcggggtgcggccgaatgagttgccgcccctctcctgatgcgcaccgcatgtttgtggagaacctggtgctaaatcactcgtagacgacctgat
>TU1358103
tccggtgtggtcggatcccctcgtgggactgatccctggtcgggctcggcccccgccgggcgcatttcctctgtcggtggtgcgccgcgaccggctctgggtcggcttggaagggcttggggcgaaggtggctaccggtttcggccgtgagctttacagcgcccctgctccgtactcgccgctttccggggccgaggacttagtacccgctgcgtcatgtccccctgcgggggggcacggggccccttgcccccggcgcgactgtcaaccgggtcggactgtcctcagtgcgtacccaaccgcgttgcgtcgccagggtagggatcggctcacgtcaactggcgccaggggtcagcggcgatgtcggcaacccacccgacggctgggggagcagttgctccgcctcctttctctcgccactgctggaagttcgttgtgcggcccatctcgtgggctctcgtttgtggtctcgcaaggggctgcttatgggggttcattggggtggtgtccgtcggcgtcccgaaggtggatcggtgggggtctggttggtggttggcagcggcgactctggacgcgtgccgggcccttctcgcggatctccccagctacggtgctcgctggccccgtttacgcggggtctccggcgggttgcctcggccggcgcctagcagctgac

Function

NR:

description
uncharacterized protein LOC111196389

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1358097 False 1024 lncRNA 0.68 4 57964952 57994099
TU1358092 False 1770 lncRNA 0.67 3 57966137 57994099
TU1358101 False 979 lncRNA 0.69 3 57966137 57994099
TU1358104 False 1453 TUCP 0.69 4 57966137 57994024
TU1358098 False 972 lncRNA 0.68 3 57969138 57994052
TU1358096 False 648 lncRNA 0.65 2 57976249 57979740
TU1358103 True 676 TUCP 0.69 2 57991901 57994024

Neighbor

gene id symbol gene type direction distance location
LOC110486920 LOC106606537 coding downstream 9339 57897166 ~ 57955613 (-)
LOC110486935 LOC106606473 coding downstream 116766 57845786 ~ 57848186 (-)
rfx1a rfx1 coding downstream 196879 57744990 ~ 57768073 (-)
LOC110486913 LOC106606569 coding downstream 237265 57707189 ~ 57727687 (-)
LOC110486915 LOC106606556 coding downstream 258139 57698059 ~ 57706813 (-)
LOC118938562 NA coding upstream 790 57994889 ~ 57995042 (-)
LOC118938643 NA coding upstream 1514 57995613 ~ 57997448 (-)
LOC110486937 LOC106606542 coding upstream 248408 58242507 ~ 58274289 (-)
iqck LOC106606545 coding upstream 358628 58352727 ~ 58371333 (-)
LOC110486946 LOC106601863 coding upstream 378570 58372669 ~ 58426053 (-)
G1190664 NA non-coding downstream 197 57963997 ~ 57964755 (-)
G1190651 NA non-coding downstream 25719 57938974 ~ 57939233 (-)
G1190649 NA non-coding downstream 29752 57934303 ~ 57935200 (-)
G1190644 NA non-coding downstream 39058 57925565 ~ 57925894 (-)
G1190631 NA non-coding upstream 8373 58002472 ~ 58003900 (-)
G1190674 NA non-coding upstream 15651 58009750 ~ 58010072 (-)
G1190678 NA non-coding upstream 17291 58011390 ~ 58011685 (-)
G1190693 NA non-coding upstream 52749 58046848 ~ 58047083 (-)
G1190694 NA non-coding upstream 53015 58047114 ~ 58047427 (-)
G1190405 NA other downstream 465797 57495988 ~ 57499155 (-)
G1190199 LOC106601813 other downstream 875037 57089171 ~ 57089915 (-)
LOC110486894 LOC106601810 other downstream 879481 57054453 ~ 57085521 (-)
G1189660 LOC106601786 other downstream 1290714 56670293 ~ 56674238 (-)
LOC110514412 NA other upstream 593226 58561680 ~ 58588526 (-)
LOC110486955 NA other upstream 602677 58588778 ~ 58603975 (-)
G1191298 LOC106606554 other upstream 765624 58759723 ~ 58762086 (-)
G1191335 NA other upstream 873964 58868063 ~ 58868971 (-)
G1192082 NA other upstream 912054 58906153 ~ 58909232 (-)

Expression


Co-expression Network