XLOC_030876 (castor1)


Basic Information

Item Value
gene id XLOC_030876
gene name castor1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 11982364 ~ 12031921 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060031
AGAGCAAAGCGTTTAATATAAATAGTTTCAAAGCTCTTTGATATAAGGGAATATTCAGATGtaagtaattgtttttatttaaatttaatgatATTTCCAATGTCAACATATTTGAAGTATTGCAgagtttagtctctttatttattggtgACCATAAACTGTAGACTGACCCATCAAAAAATGCTACTGTTCCTTTTAGAAAAAGGGGCGTGTCCCTTCGCTGGACGTGTTCTGTTCGAACTGTACAAGTGCAGGAAAATTAACAGGTAGAAAAGACTTGCTGGCACATGGGTCTCAAAGAGGGCGGTGCTTCACttgctaatatttttattttggattattagatttttttttaattcccatgtcatgataaattgttttttaggaTCCCCAGTGTTATATTTCAAGTGTATGTATggctttaaaatgtttacaaaagcgAATTATAACCGACTTTGTCACGCGGTGTCTGTTACTTTTCTCAGCGCCTTTGAGAATCGACTTTTCACGAGTACTTGTTATGACTTCGTATGGATTAAAAATCACTTATCATCGATTTACTTTCATATTTAAggtaataatcattaaaaaaaatatattttataaacatataCTTTAAAATCTACAGATATCTTTAATAAGTCAAATAAACAGCGTCCTTATTCTCCAAACGCCACCTGAAGGACGTGAGGTGTATGTCCCATCGTAGTCTGCACTTAGAGCTCCACTTTCTGTTCATTTCTCGACTCGAAttacagtgagtgtgtgtgtcccaCCAGCAGACTCCACCAGTGTGCCCAATGCATGAGGATGAGGCGTTTTTACGAGCAAGGGAATGTAACATCATATAGGCGGATCTCGCGTTGCGTTATTTAACGCGCCCACCTGCGCCGCACACACACTTTTCCACGGCGTCTTCCTGGTGGACCAGAAAACGATGGATCTTCACATACTGGACCATCGATTAAGGGTGACTTGCATCAGCAAAAGCGGACTGCAACATTACACACACCCGCTGATCAAACTGATATTTCTGAGAAACAGGACGAGATGCAAATTTTTCAGTCTCACAGAGACTCCTGAAAATTACACTGTTGTCCTCGACGAGGAGGGATTTAaagAGCTGCACCCGTCTGAGCACTTACAGGTGGAGGGCTCCACGTGGCTCCCGCTCAATGTGGTCTCGAATGGCAATGCTTCCAGCAGCTCGCAGGCTGTGGGCGTCACTAAAATTGCCAAGTCCGTCATCGCTCCTCTGGCAGAGCAGCACGTGTCCGTCTTTATGCTCTCCACCTATCAGACTGACTTCATTCTGGTGCGAGAGAAAGACCTGTCTGTGGTGGTGGAGACTCTGGTGGAAGAGTTTAATATTTTCCGAGAGGAGGGAGGAGAATCAGTGCCTGTTCACAGTCAGGACTCCTGCAATGGTCTGCAGAGGAACGGCAGAGAGGTTCCACATGCAACTGTTCATCCAGTGTTGATCCCGGAGAATCATTTTTGCGTAATGAGTTTGGATCCGGACACTCTGCCAGCAATCGCAACCACCCTCATAGACGTTCTGTTTTACTCGAACAGTCCTAAAGAGGGCGCCAGTGTTGACCAAGACATGGAGTGCATCAagttcttctctttctctctgattGACGGATATGTGTCTTTAGTGATGGACACAGACGCACAGAGACAattcCCAGCTGATCTTCTGTTCACCAGCTCCTCTGGTGAGCTCTGGAGAATGGTGAGAATAGGAGGGCAGCCTCTTGGATTCGATGAATGTGGAATAGTTGCTCAGATCTCGCAGCCTCTTGCTGACAGTGATATATCAGCGTATTATATTAGCACCTTCAGCTTCGATCATGCTCTGGTGCCAGAAGAAGACATTACGAGCGTGATGGAGATGCTTCAGACTCAGAGAAAGGAAATGTCCAGTTGAGGACAGAAAAAGACCTTCACAATGGATGGTAGATCTTACATGAGCCACTAACACACAGTATTATTCTATAACCTAAGGTGCTTCAGTCACAGCATTCGAGAGTGAGGCTTCAAAGGCCTTAACTCTGAAATCAGTGgcttttttcgttttcttttcatttttcttttcttttttttttttttttttggctttttgttTTTGAAGGAAAGGCAGTGCTGGTTAAATCCCATTTctaagaatttaaatatttacatgacTGATTTTTGTAAGGATGTTGATGTGGCGTTTTAATGCCTGAATACTTAAAGCACTTTTCTGATTTAAAATGAGaagtttattgttttttattccaTTATTGCAGGGGTAGTTAAACGCAAATTGATGTCCTGTAATTCATAACGGGAAAGTTTCCGTTTCCTGCAGATATCATTACACTAAGTATTGCACAAAAATGTCTTCCAGTGTTGTCTAAAATCAGGGTTTTGTTTCTCGAATAAGCCAGTTTAAGGTCAAACAAAAGGAACTTTTATTTGTCATAGCATTTGGTGTCATTAAAACAttgggtcactttattttgatggtctgtttgttgaatttaagttacattgcatctactaATTCTCAATATATTATAAGGAGAATGTTAGGTTGggcttggggttagggttagtgtaaatgACATGCacctgcaaagtttcttatagtcagttaaatgtttgttgaaggagcagtatcagcagatattaagcagacagtctactaattggaccatcaaaataaagtgttaccgaatattGCACTTAGAAAAACACAGTTCCTGATGGAGACATAGTCGGATCACTTTTGAAAAAGTCATGCTGTTATGATTACTTTTGTTTGCTTAAAAGCCAAATGGCAGCTGTTTACACCTATAGCTTACTGGGGTGCATCTCACAAAATGTATctaatcatattttatatttaataaatggatTTGGATGGAGTTTAAGGTCATGTTTTGcataaagaaaatgaaattaaGTCTTtagtataaatttaaatattttttcacattaccTCAAAACAAACATCATAGTAATTGCACTTCAGTATTCGTTTTACAGTGCAAAATTACTGTATTAAAGTGGTGAGAGTCAAATGAGAGGAATTCTGacccaaaattaaataaatatttaacaaagtcAATTTGACAAATTATTGATGACCTATAACCATGTTATAATgccatataaacacacacacacacttataaattttaagtatataacattttaaaaatcattttaaaatacaaaccaTTGTAATTTAAGGAATATTTCAGCGTTTAGTttgttattatttctttaaaacgtTATAATTAAGCAAAatttagacatatatatatatatatatatgagagcaatatcacacgaatagcagtgcgatatggctgtatatcggcactggcgGGAGGCGTTGCGTTgtgcttagtgcccccaccagtgccgatatacagccaaatcgcactgctacttgtgtgatattgcgtttatacaactgtttgacgacataattgtgtatataaatatgtatgtatgtagttgagtaatacacaaagggtaaagaggctgtacgggtgctgatattatttaaatatatcacagctatcagccaatcagattcgagagccagacagaactgttatatatatatatatatatatatatatatatatatatatatatatttatcatcatcattaatgttattattttgttatatatttttaaggaAATGTgacggattttttttttgtgagattcACCCTTTCTTAAGAATCCTGTTTTGACAGCTTCGCAGCTCTAAAGTCATATATAGTGCGTGTAGACGAAAGAATCTGTGAAGTTTATCAATGTCCCTTGATTTGCTTTCATTTGCTCACAGACTGATAAGAGTTGGAAGGATGAGTAAGTTTAAGTTCTAGCAACGTTCGTCAATTGATCCACAGGTTGATTAAGAACATTTTTCTTGCGCAACCGTCTGACAAATGAAAGCGTTGATTCTGACACTTGCTTTGTCACTTCTGCCTTTTTGCTTGATGCAAAAACATGCCCAGATCCAGTGTGGCCTTAAAGTCTCATTTTGTTATTCACTACAAAGCACAAATGAATGCACAAATTGAGGAAAagtgctctgaaacaatcattaTTTAACCTCTTGATTGGTGAGAAACcccaaaaatatcatttaaaattatattgaaaAGTTGCTGGTTGTATTTCGTAAGCACAATCACTAATAAATGCAGAAATATATTTTATCGCTGTTACAGATAAGGTCAATGTTTTTTGGTTGAACTGCTAAAACATAAACACTAGCATTATACAGAATATtatacaacacaggctcattctgaaaatttcGCACTTACCACCGCTTACCTTCATATGAATAGCTTTTCTGCTGGtaacagtttgtccagttagcttgccttGTACAGCGGCAGAGACCTATAGAGGAGTTAACCACGACAACCGGCTTAAAGTCCAGAGAAGAATGATTTCATAAAACTGGTAAGAGAAAAGCAGAagccaaaaaatgtaataaacaaataagtaaccGGGTGAAAATGTGATAAGatctaaaaacatgataaaaatcaggtgagggcctTTCTTTTagtggattgctttttaaaactattggttgggtttccggaaggaggagggtgggtcagtcgatctgtcagtcagtcagttgacagcggcctctggtgtattcacaagggaacagcaggcgcgaatggctcTCACGTAAAAAATTTGAGATCCCAAAAAGCAaacacatcggcctctggtgaatttacgtgagaacagccgGAGCAAATGCCACTCACAAGAGGAATGtcagatctcaaaaagcatacacggcGGAccctggtggatttatgcgagaacagcaggcgcgaatgccaCTTGCAAtacaaatttgagatctcaaaaagaatAAACAGCAGCCCCTGGTGTATTTACAccagaacagcaggcgtgaatggcgctcgcaaaaaaaaattgagatctAAAAAGGGaaacagcggcttctggtggatgtacgcgagaacagcaggcatgaatggctcTCGTGTAAAAAGTTTGAGATCTCAAAgcgtacacatcggcctctgATGGATCTACGTGAGAACGGCAGGCGCGAATGCCACTCGTGgaagaaatctgagatctcaTAAAGCGTATCTAGcgggcctctggtggatttatgcaagaatagCAGGCATGAATGCCACTCGTGAAgaaatctcaaaaagcgtacaaagtggcctctggtggatttacgcgaaaaCAGCATCCACAAATGCCACTCGCGACGACAATTTGAGACCTCAAAAAGCTTCCACAGCGGCCTTtgatggatttgcgaaaacaaaaactgcataaaaaacgTACCTTCTGTGGCGTATTTgccgctctctagaaatgtatatagcgctacgttttcagaatgagcctgggttgatattaTACTAATAATTATAGTCACTTTGCtaacactgatgtttttttttttttttttttttttgatatagtCGCTCTATTTTTCAAGGCACAAATGCAGCATAAAACTAATAATGAAAGTGATTTTTGAGATCATGGTTTAAGGACACCATGTATTAACAAAAACGATTTCCAGTGCCATTAAGGAGCCATTTTCATACATTTGTTTGATCTCATTTCTATAATATCAGCAAATCAGAAAAGTTCAAGGTTACTGGTGTGCACAAATGCAGCATAAAACTAATAGTGAAAGTGATTTTTGAGATCATGGTTTAAAGACACCATGTGTTACTAAAATGAATTGTTAGTGGATTTCTAGTGCCATTAAGGAGCTATTTTCATGTTTGTTTCATCTCATTTCTACAATATCAGCAGATCTGCTAAGACCAAGGTTACTGGTGTGCAAAAGGGATGTTTGTACATATCATCAATGAttctaagtattttttttcttgctttttgcAGACAGATGGTTTATCTGAAGTAATTTTTGGTACATTTTATACAGTGTCAAAGGAATCGTATACATGTTTGTAACAGTGCTGCTTGTTCAATAAataacttttgaaaacacttgtcATTTATTAAAGTTGTGTTTTTTACGTGTATATACATTCACTATACACACATGCTCAGTGTAATTTAAAAGCtctgtattgattataaaatattgctttttttaaaaatgtaataatctagctcctgtttatcttacCAACCTCCTGTCttgctacaaaccaactcgctctttaagat
>TCONS_00060032
ATGCAAATTTTTCAGTCTCACAGAGACTCCTGAAAATTACACTGTTGTCCTCGACGAGGAGGGATTTAaagAGCTGCACCCGTCTGAGCACTTACAGGTGGAGGGCTCCACGTGGCTCCCGCTCAATGTGGTCTCGAATGGCAATGCTTCCAGCAGCTCGCAGGCTGTGGGCGTCACTAAAATTGCCAAGTCCGTCATCGCTCCTCTGGCAGAGCAGCACGTGTCCGTCTTTATGCTCTCCACCTATCAGACTGACTTCATTCTGGTGAGAGAAAGAGATAAACTGATGCTCAGATATGTAACattttaaggggatagttcacacagtaatgaaaatatactttttttttttaccctgaaGTGATTCCAAAACATTGagctttctttttctgttgaacacaaaagatattttgaataatgctagAAATCAGTAGCCATCATAGTATGACAGATAAAATACTAaagtagtcaatggttacaggttttcaacattctttaaatagcttcttttgtgtttaacaaaaaaaaaaaaagaaactcaatgttaactttggaacaagtgaagagcaAGCAAATGATTACAGAGAATTGAGAATAGTTTGCTCatgattaggcccacacggaatctgcgcgc
>TCONS_00060033
TCGAAttacagtgagtgtgtgtgtcccaCCAGCAGACTCCACCAGTGTGCCCAATGCATGAGGATGAGGCGTTTTTACGAGCAAGGGAATGTAACATCATATAGGCGGATCTCGCGTTGCGTTATTTAACGCGCCCACCTGCGCCGCACACACACTTTTCCACGGCGTCTTCCTGGTGGACCAGAAAACGATGGATCTTCACATACTGGACCATCGATTAAGGGTGACTTGCATCAGCAAAAGCGGACTGCAACATTACACACACCCGCTGATCAAACTGATATTTCTGAGAAACAGGACGAG

Function

symbol description
castor1 Predicted to enable arginine binding activity. Predicted to be involved in cellular response to L-arginine and negative regulation of TORC1 signaling. Predicted to act upstream of or within regulation of TORC1 signaling. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human CASTOR1 (cytosolic arginine sensor for mTORC1 subunit 1).

GO:

id name namespace
GO:1903432 regulation of TORC1 signaling biological_process
GO:1904262 negative regulation of TORC1 signaling biological_process
GO:1903577 cellular response to L-arginine biological_process
GO:1902531 regulation of intracellular signal transduction biological_process
GO:0061700 GATOR2 complex cellular_component
GO:0005829 cytosol cellular_component
GO:0034618 arginine binding molecular_function

KEGG:

id description
ko04150 mTOR signaling pathway

ZFIN:

id description
ZDB-GENE-050327-38 Predicted to enable arginine binding activity. Predicted to be involved in cellular response to L-arginine and negative regulation of TORC1 signaling. Predicted to act upstream of or within regulation of TORC1 signaling. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human CASTOR1 (cytosolic arginine sensor for mTORC1 subunit 1).

Ensembl:

ensembl_id ENSDARG00000079588 ENSDARG00000107096

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060031 False 6240 processed_transcript 0.38 9 11982364 12031921
TCONS_00060032 False 634 lncRNA 0.41 2 12010828 12018688
TCONS_00060033 True 303 mRNA 0.50 1 12030872 12031174

Neighbor

gene id symbol gene type direction distance location
XLOC_030875 osm coding downstream 10418 11965113 ~ 11971946 (-)
XLOC_030874 rnft2 coding downstream 37966 11916928 ~ 11944398 (-)
XLOC_030873 fbxw8 coding downstream 76444 11864429 ~ 11905920 (-)
XLOC_030872 nf2a coding downstream 172654 11724428 ~ 11809710 (-)
XLOC_030871 NA coding downstream 319036 11576673 ~ 11663328 (-)
XLOC_030877 nipsnap1 coding upstream 881 12032802 ~ 12063381 (-)
XLOC_030878 lrrc74b coding upstream 34036 12065957 ~ 12093618 (-)
XLOC_030879 nos1 coding upstream 68205 12100126 ~ 12525441 (-)
XLOC_030880 CR735143.1 coding upstream 160977 12192898 ~ 12193014 (-)
XLOC_030881 BX276096.2 coding upstream 334288 12366209 ~ 12366325 (-)
XLOC_030869 NA non-coding downstream 516211 11356637 ~ 11466153 (-)
XLOC_030868 CABZ01077121.1 non-coding downstream 698843 11278426 ~ 11283521 (-)
XLOC_030866 NA non-coding downstream 944059 11037177 ~ 11038305 (-)
XLOC_030865 NA non-coding downstream 1010763 10967799 ~ 10971601 (-)
XLOC_030888 NA non-coding upstream 803605 12835526 ~ 12836607 (-)
XLOC_030893 NA non-coding upstream 1245320 13277241 ~ 13306705 (-)
XLOC_030896 AL954191.1 non-coding upstream 1500953 13532874 ~ 13532988 (-)

Expression


Co-expression Network