XLOC_030877 (nipsnap1)


Basic Information

Item Value
gene id XLOC_030877
gene name nipsnap1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 12032802 ~ 12063381 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060034
TTTCAGAACTCCTAAAACGGAATCAACAGACAAGGCCATCTTAATCTGGTTCAATATTTGAGCGTCTTTCTTCTTCTTCGTTTTGTTTGTTTGGCGGTATTTTAATCACATCAGCGGTCAACGCAACAGATTAATCATCGTGTTTAACGACTTTCTAAACTTTGGTGAATCAAAGGAGCAGCACATGTAGCTGAAGTCCAACAGTTCACGCGCGTCAAACATTAACTTCAAGGAGCAGGACTGACGAAACTCCCGCAGCTTCATAAAGACGCAAAACTAGAAACAACAAGCAACAATGATGGCTACCGCACGACCTCTGCAGCTCCTCAACACACAGCAGCATTTCCTCAACAATGTGCTTGCAGCATGGCTGGCCAGAGGTTTTGCGAATAAAAGTGACGAAGGCTGGTTGAGTTCCATGTTTGCACACAAAGTGGATGCCAGGAAAGATGCCCACTCCAATCTGCTCTCCAAGAAAGAAACCAGCAACCTCTACAAGATTCAATTTCACAATGTCAAGCCTGAGTATATGGAGgaatacaacaaactatcGGACGAGGTGCAGAAGGAGCTCCATCATGATACAGATTATCCCTGTGAAGTTGTTGGAAGCTGGAACACATGGTACGGTGAACAGGATCAGGCAGTGCATCTGTGGAGATACTCTGGAGGTTATCCTGCTCTGACCGAGTGTTTGCGCAAACTAAACCTTAACACGGCATATCTTGCGTTTCGAAAAGAGAGGAGCAAAATGTTACTCTCCAGACGCAACCAGCTGCTTCTGGAGTTTAGTTTCTGGAATGAACCTGTGCCAAGAAGCGGCTCCAACATTTATGAACTCAGATCATATCAGCTACTGCCCGGCACGATGATCGAATGGGGAAATCATTGGGCTCGAGCGATCAAATATCGTCAAGAAAACAATGAAGCGGTGGGCGGATTCTTCACACAGATCGGAGATTTGTATGTAGTGCATCATTTATGGGCTTATAAAGACCTGCAGTCCAGAGAAGAGACCAGAAAGGCTGCTTGGGAAAAAGAGGGCTGGGACGTCAGTGTGCACTATACAATGCCCCTAATCCAAAAGATGGAGTCGAGGATTATGATCCCCATGGTACATTCACCTCTGCAGTAAAAGCAGCCGTCTGTGAAGAAACCGAGTTCAGATGTGCTGTGGTGAAGTGTTGAGGTGTGATTTACTCAAACAGATGATCAAGACCTTCAGATCCTCTTACAGGTGGAACTAAACTTTCCAGAAGCCAGAGAAACCCCCCCGCGATGACAGCCCAGTGCCTGTGTactatatacatacagttatagGAAAATATTAAAGAAGCCACTTGAAAATAATTTATAGCTTGAGCTatacagcatgtgtttgtgtaaaactgtattttagatgtattctgtaaactactgttAAGTTTTTTTccatataaaatgaataaatgtcattatttagagaatttaaa

Function

symbol description
nipsnap1 Predicted to be active in mitochondrion. Is expressed in several structures, including endoderm; heart; liver; pectoral fin; and pleuroperitoneal region. Used to study Parkinson's disease. Orthologous to human NIPSNAP1 (nipsnap homolog 1).

GO:

id name namespace
GO:0005739 mitochondrion cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-991008-17 Predicted to be active in mitochondrion. Is expressed in several structures, including endoderm; heart; liver; pectoral fin; and pleuroperitoneal region. Used to study Parkinson's disease. Orthologous to human NIPSNAP1 (nipsnap homolog 1).

Ensembl:

ensembl_id ENSDARG00000005320

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060034 True 1472 mRNA 0.43 10 12032802 12063381

Neighbor

gene id symbol gene type direction distance location
XLOC_030876 castor1 coding downstream 881 11982364 ~ 12031921 (-)
XLOC_030875 osm coding downstream 60856 11965113 ~ 11971946 (-)
XLOC_030874 rnft2 coding downstream 88404 11916928 ~ 11944398 (-)
XLOC_030873 fbxw8 coding downstream 126882 11864429 ~ 11905920 (-)
XLOC_030872 nf2a coding downstream 223092 11724428 ~ 11809710 (-)
XLOC_030878 lrrc74b coding upstream 2576 12065957 ~ 12093618 (-)
XLOC_030879 nos1 coding upstream 36745 12100126 ~ 12525441 (-)
XLOC_030880 CR735143.1 coding upstream 129517 12192898 ~ 12193014 (-)
XLOC_030881 BX276096.2 coding upstream 302828 12366209 ~ 12366325 (-)
XLOC_030882 wsb2 coding upstream 486170 12549551 ~ 12560569 (-)
XLOC_030871 NA non-coding downstream 369474 11576673 ~ 11663328 (-)
XLOC_030869 NA non-coding downstream 566649 11356637 ~ 11466153 (-)
XLOC_030868 CABZ01077121.1 non-coding downstream 749281 11278426 ~ 11283521 (-)
XLOC_030866 NA non-coding downstream 994497 11037177 ~ 11038305 (-)
XLOC_030888 NA non-coding upstream 772145 12835526 ~ 12836607 (-)
XLOC_030893 NA non-coding upstream 1213860 13277241 ~ 13306705 (-)
XLOC_030896 AL954191.1 non-coding upstream 1469493 13532874 ~ 13532988 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000071_05082669_05087793 NIPSNAP1 coding CI01000071 null 5082300 ~ 5087817 (+)