G1190879


Basic Information

Item Value
gene id G1190879
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 58277677 ~ 58279594 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1358400
ccacatcattacaccctgcataaaaatactacccacatcattacaccctgcataaaaatactacccacatcattacaccctgcataaaaatactacccacatcattacaccctgcataaaaatactacccacatcattacaccctgcataaaaatactacccacatcattacaccctgcatacaaatactacacacatcattacaccctgcataaaaatactacacacatcattacaccctgCATAAAAATACTACCCACatcattacaccctgcataaaaatactacagacatcattacaccctgcataaaaatactacacacatcattacaccctgCATAAAAATACTACAACATAATTACACCCTGCATAAAAATACTACCCACATCATTACACCCTGCATGAAAATACTACAACATCATTACACCCTGCATAAAAATACTACAACATCATTACACCCTGCATAAAAATactacacacatcattacaccctgCATAAAAATACTACAACATCATTACACCCTGCATAAAAATACTACCCACATCATTACACCCGGCATAAAAATactacacacatcattacaccctgcataaaaatactacaacatcattacaccctgcataaaaatactacaacatcattacaccctgcataaaaatactacacacatcattacaccctgcataatgatactacacacatcattacaccctgcataatgatactacacacatcattacaccctgcataatgatactacacacatcattac

Function

NR:

description
PREDICTED: uncharacterized protein LOC106590439 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1358400 True 774 lncRNA 0.36 3 58277677 58279594

Neighbor

gene id symbol gene type direction distance location
LOC110486938 LOC106611499 coding upstream 82198 58131285 ~ 58195479 (+)
LOC110485250 LOC106606520 coding upstream 167483 58083262 ~ 58110194 (+)
LOC110486927 LOC106606522 coding upstream 219634 58055025 ~ 58058043 (+)
LOC110512521 LOC106606521 coding upstream 225147 58049362 ~ 58052530 (+)
LOC110486929 LOC106592861 coding upstream 419683 57847447 ~ 57857994 (+)
LOC110486945 fa10 coding downstream 6664 58286258 ~ 58295388 (+)
LOC110514297 gprc5b coding downstream 33162 58312756 ~ 58347543 (+)
LOC118938097 NA coding downstream 68936 58348530 ~ 58349263 (+)
LOC110486947 LOC106601860 coding downstream 148778 58428372 ~ 58446189 (+)
LOC110538555 NA coding downstream 241769 58521363 ~ 58557066 (+)
G1190860 NA non-coding upstream 10995 58264649 ~ 58266682 (+)
G1190847 NA non-coding upstream 52960 58224472 ~ 58224717 (+)
G1190844 NA non-coding upstream 54802 58222669 ~ 58222875 (+)
G1190843 NA non-coding upstream 55657 58221704 ~ 58222020 (+)
G1190842 NA non-coding upstream 56296 58221145 ~ 58221381 (+)
G1190897 NA non-coding downstream 39324 58318918 ~ 58319623 (+)
G1190898 NA non-coding downstream 40614 58320208 ~ 58321158 (+)
G1190906 NA non-coding downstream 54089 58333683 ~ 58334215 (+)
G1190907 NA non-coding downstream 68556 58348150 ~ 58348501 (+)
G1190689 NA other upstream 236382 58040886 ~ 58041295 (+)
G1190568 NA other upstream 283175 57950494 ~ 57994502 (+)
LOC110514101 LOC106606600 other upstream 637119 57522756 ~ 57640558 (+)
LOC110486909 LOC106601794 other upstream 652272 57613961 ~ 57625405 (+)
G1189819 NA other upstream 1222060 57054453 ~ 57055617 (+)
G1191444 NA other downstream 988477 59268071 ~ 59270262 (+)
G1191529 LOC106601890 other downstream 1106578 59381313 ~ 59388776 (+)
G1191622 NA other downstream 1346241 59625835 ~ 59626661 (+)
LOC110486998 LOC106606498 other downstream 1633504 59912124 ~ 59920162 (+)

Expression


Co-expression Network