Fish Transcriptome and Expression Database

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model fish

XLOC_030880 (CR735143.1)

Basic Information

Item	Value
gene id	XLOC_030880
gene name	CR735143.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007116.7
NCBI id	CM002889.2
chromosome length	72500376
location	12192898 ~ 12193014 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060039
TGCCACAGCCGTATCACCCTGCTGCTCAACACTGgttgctcactgaagctaagcaggcctGAGCCTGGTCTTtagctggatgggagaccacataagaAAACTAGGTTGCTATTGGAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000113708

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00060039	True	117	rRNA	0.51	1	12192898	12193014

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_030878	lrrc74b	coding	downstream	99280	12065957 ~ 12093618 (-)
XLOC_030877	nipsnap1	coding	downstream	129517	12032802 ~ 12063381 (-)
XLOC_030876	castor1	coding	downstream	160977	11982364 ~ 12031921 (-)
XLOC_030875	osm	coding	downstream	220952	11965113 ~ 11971946 (-)
XLOC_030874	rnft2	coding	downstream	248500	11916928 ~ 11944398 (-)
XLOC_030881	BX276096.2	coding	upstream	173195	12366209 ~ 12366325 (-)
XLOC_030882	wsb2	coding	upstream	356537	12549551 ~ 12560569 (-)
XLOC_030883	vsig10	coding	upstream	369174	12562188 ~ 12587053 (-)
XLOC_030884	aifm3	coding	upstream	444809	12637823 ~ 12701603 (-)
XLOC_030885	si:dkey-98f17.3	coding	upstream	520244	12713258 ~ 12713920 (-)
XLOC_030871	NA	non-coding	downstream	529570	11576673 ~ 11663328 (-)
XLOC_030869	NA	non-coding	downstream	726745	11356637 ~ 11466153 (-)
XLOC_030868	CABZ01077121.1	non-coding	downstream	909377	11278426 ~ 11283521 (-)
XLOC_030866	NA	non-coding	downstream	1154593	11037177 ~ 11038305 (-)
XLOC_030888	NA	non-coding	upstream	642512	12835526 ~ 12836607 (-)
XLOC_030893	NA	non-coding	upstream	1084227	13277241 ~ 13306705 (-)
XLOC_030896	AL954191.1	non-coding	upstream	1339860	13532874 ~ 13532988 (-)
XLOC_030905	CR388049.1	non-coding	upstream	2052135	14245149 ~ 14245280 (-)

Expression

Co-expression Network