Fish Transcriptome and Expression Database

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model fish

XLOC_030881 (BX276096.2)

Basic Information

Item	Value
gene id	XLOC_030881
gene name	BX276096.2
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007116.7
NCBI id	CM002889.2
chromosome length	72500376
location	12366209 ~ 12366325 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060045
AGCCACAGCTATAACACCTTGTaacccaagactggttactcactgaagctatgcAGAGCTGagcttggtcagtacctggatgggagaccccATCGataaactaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000107029

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00060045	True	117	rRNA	0.49	1	12366209	12366325

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_030880	CR735143.1	coding	downstream	173195	12192898 ~ 12193014 (-)
XLOC_030878	lrrc74b	coding	downstream	272591	12065957 ~ 12093618 (-)
XLOC_030877	nipsnap1	coding	downstream	302828	12032802 ~ 12063381 (-)
XLOC_030876	castor1	coding	downstream	334288	11982364 ~ 12031921 (-)
XLOC_030875	osm	coding	downstream	394263	11965113 ~ 11971946 (-)
XLOC_030882	wsb2	coding	upstream	183226	12549551 ~ 12560569 (-)
XLOC_030883	vsig10	coding	upstream	195863	12562188 ~ 12587053 (-)
XLOC_030884	aifm3	coding	upstream	271498	12637823 ~ 12701603 (-)
XLOC_030885	si:dkey-98f17.3	coding	upstream	346933	12713258 ~ 12713920 (-)
XLOC_030886	lztr1	coding	upstream	357721	12724046 ~ 12743212 (-)
XLOC_030871	NA	non-coding	downstream	702881	11576673 ~ 11663328 (-)
XLOC_030869	NA	non-coding	downstream	900056	11356637 ~ 11466153 (-)
XLOC_030868	CABZ01077121.1	non-coding	downstream	1082688	11278426 ~ 11283521 (-)
XLOC_030888	NA	non-coding	upstream	469201	12835526 ~ 12836607 (-)
XLOC_030893	NA	non-coding	upstream	910916	13277241 ~ 13306705 (-)
XLOC_030896	AL954191.1	non-coding	upstream	1166549	13532874 ~ 13532988 (-)
XLOC_030905	CR388049.1	non-coding	upstream	1878824	14245149 ~ 14245280 (-)
XLOC_030911	NA	non-coding	upstream	2414517	14780842 ~ 15176098 (-)

Expression

Co-expression Network