G1191008


Basic Information

Item Value
gene id G1191008
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 58448408 ~ 58511397 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1358582
tatttttaacCCGGTACCGGTTACCTATAGAtgagtcctgtgacacttgtgaGGGTCATGGAGCAAAACGtattgtgagagtctcccctttccatagagtggtcataatacTCTGTAGGCTAAAATGTTCTGACACTACAGAAGTTTTCAGGAAAacagattttcgggatgtctcatggtctgacaaacatctctctagctctgacacctttcaccgcagatgggatgtctcatggtctgacaaacatctctctagctctgacacctttcaccgcagatgcggaagtggtggattgagacatatctccagcttaaactgatggattttgatgggaTTTAAAAAATGTTCATTAGGTTTACGCACCAGTGTGTCAATCAACCATAGACAGTTTAAGAATTCACTAACTTTCCGGTCCAACACACCTGAACAAGTTTTTCTGCCTGTATGATGATacctattc
>TU1358580
ATTTTAACCCGGTACCGGTTACCTATAGAtgagtcctgtgacacttgtgaGGGTCATGGAGCAAAACGtattgtgagagtctcccctttccatagagtggtcataatacTCTGTAGGCTAAAATGTTCTGACACTACAGAAGTTTTCAGGAAAacagattttcgggatgtctcatggtctgacaaacatctctctagctctgacacctttcaccgcagatgggatgtctcatggtctgacaaacatctctctagctctgacacctttcaccgcagatgcggaagtggtggattgagacatatctccagcttaaactgatggattttgatgggaTTTAAAAAATGTTCATTAGGTTTACGCACCAGTGTGTCAATCAACCATAGACAGTTTAAGAATTCACTAACTTTCCGGTCCAACACACCTGAACAAGTTTTTCTGCCTGTATGATGATacctattc
>TU1358581
ATTTTAACCCGGTACCGGTTACCTATAGAtgagtcctgtgacacttgtgaGGGTCATGGAGCAAAACGtattgtgagagtctcccctttccatagagtggtcataatacTCTGTAGGCTAAAATGTTCTGACACTACAGAAGTTTTCAGGAAAacagattttcgggatgtctcatggtctgacaaacatctctctagctctgacacctttcaccgcagatgcggaagtggtggattgagacatatctccagcttaaactgatggattttgatgggaTTTAAAAAATGTTCATTAGGTTTACGCACCAGTGTGTCAATCAACCATAGACAGTTTAAGAATTCACTAACTTTCCGGTCCAACACACCTGAACAAGTTTTTCTGCCTGTATGATGATacctattc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1358582 False 461 lncRNA 0.42 3 58448408 58511397
TU1358580 False 459 lncRNA 0.42 2 58510540 58511397
TU1358581 True 402 lncRNA 0.42 2 58510540 58511397

Neighbor

gene id symbol gene type direction distance location
LOC110486947 LOC106601860 coding upstream 2219 58428372 ~ 58446189 (+)
LOC118938097 NA coding upstream 99145 58348530 ~ 58349263 (+)
LOC110514297 gprc5b coding upstream 100865 58312756 ~ 58347543 (+)
LOC110486945 fa10 coding upstream 153020 58286258 ~ 58295388 (+)
LOC110486938 LOC106611499 coding upstream 252929 58131285 ~ 58195479 (+)
LOC110538555 NA coding downstream 9966 58521363 ~ 58557066 (+)
LOC110518424 LOC106606554 coding downstream 218294 58729691 ~ 58762694 (+)
LOC110487024 LOC106606483 coding downstream 628673 59140048 ~ 59251086 (+)
LOC110487014 LOC106606516 coding downstream 740899 59252296 ~ 59259759 (+)
LOC110487018 LOC106606511 coding downstream 748565 59259962 ~ 59267092 (+)
G1190995 NA non-coding upstream 22350 58425513 ~ 58426058 (+)
G1190994 NA non-coding upstream 23971 58424131 ~ 58424437 (+)
G1190991 NA non-coding upstream 29633 58418428 ~ 58418775 (+)
G1190990 NA non-coding upstream 30216 58417904 ~ 58418192 (+)
G1190986 NA non-coding upstream 35242 58412299 ~ 58413166 (+)
G1191041 NA non-coding downstream 62537 58573934 ~ 58575704 (+)
G1191068 NA non-coding downstream 64322 58575719 ~ 58584498 (+)
G1191075 NA non-coding downstream 82634 58594031 ~ 58603609 (+)
G1191085 NA non-coding downstream 102983 58614380 ~ 58617022 (+)
G1191073 NA non-coding downstream 113119 58624516 ~ 58626046 (+)
G1190689 NA other upstream 407113 58040886 ~ 58041295 (+)
G1190568 NA other upstream 453906 57950494 ~ 57994502 (+)
LOC110514101 LOC106606600 other upstream 807850 57522756 ~ 57640558 (+)
LOC110486909 LOC106601794 other upstream 823003 57613961 ~ 57625405 (+)
G1189819 NA other upstream 1392791 57054453 ~ 57055617 (+)
G1191444 NA other downstream 756674 59268071 ~ 59270262 (+)
G1191529 LOC106601890 other downstream 874775 59381313 ~ 59388776 (+)
G1191622 NA other downstream 1114438 59625835 ~ 59626661 (+)
LOC110486998 LOC106606498 other downstream 1401701 59912124 ~ 59920162 (+)

Expression


Co-expression Network