G1191085


Basic Information

Item Value
gene id G1191085
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 58614380 ~ 58617022 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1358685
TTTTGCAATTATCTTTCACATTCATTTCGTATAAAGCAATAAAAAGTCATATGTGCTCAGTTTTAGGACTATATTAAGCAGAATACATAATACAAAAACAATTAACATTTAAAGTGCTCAATTTTGTTAATTGTCCAGAACAAACAGTTATTTTTCTGAACAAAAAAATGTGTGGAAGCTAGCTCAGAGTTCCAACAACAGGCATTCCTCCGTTTTCAAAAAAATTAAACTGGCACAAAAGAAACACCTGGGGTCCAATCTGCAATTAAGACACATTATATCTCAAGTTCATCTTGCTGTTTATTTTTCTTGAACAAGCACAGTTATTTTTCTGAACATAACAAGAGGTGGGGGGTGACCAAGGGCCTAGCTCATCTAGGCCTATATCTCAAAGTAATTATCCATTTCATCCTCCCTATCCTCCTCCTTATCAATTCCTCCACTGCGGAGTCGTTGGTTGTGGTACATGAAGACCAAGGCTCGTAAGTTGTTGTTAGAGGTTTATCGCCTACAGCTGGATAACACAAGCTTGTAGATACTGTTGCTTCGCTCAGCATCAGCAGAGTTTGAGACGGCATCTTTGTAGTGTTTGGTCAGAATGTTCAGCACAGGAAGTCTCTCTTGAAGTCCATCCCAGAAGATATCCAAATCCACCACCCCACTCACTGTGGCTCTCAGTGGTGCTGGTCCTACATTGGTGAAGTAGGCAtcgggttcatctctctgtaccTTACTGAAGCCTGGAATAGCCGTGAAGCTGGACACTCTGTCATCCATAAACGCAATGTGACGTGGATCAAGCACCCTAACTTCTTGGAGGAACTCCATGGCAGGCTGACCATCTGACATGTACTTTGTAAGTTTTTCCTCTGCATTGCTGTATGAATCAAGAGTTTGGTTTTCACAGCAAAGGGCAAGTCATCAACTGTGTCAAAGCAGTGTGAACAAGCCTCATACTGTAGTTCTTTGTTGGCTGCAATGTTCATCTGCAAGTCCTCTAAATACTGAAAGATCTTTGTTGTCACGGGGCGTCTGCTCTAGAAGATGTCGAGAAGCTGCAGGATGACTTTGCACTTGTCTGTCATGATGTTCAGCTGAATCTGCAGCGGCTGAACCTGCTCTTTGACTTGTAGCATCTCATGGAGATTCTCTACAGACTGTGGTGCACTTTGGCCACACACCTGTGAGTGACAAGGAATAAAAAAGAGGAACATAGGAAATATTACTTTTATTCACTGTGAAATTACATCACGTCTTTCTGCATAATTACAATGATATAAATGACAATGACTTAAGCAATTGTaagacgtacagttgaagtcggatgtttacatacacttaggttgtagtcattaaaacttgtttttcaaccactccacaaatgtattgttaacaaactatagttttggcaagtcggttaggacatctcctttgtgcatgacacaagtcattttttccaacagttgtttacagatagattatttcacttctaattcactgtatcacaattccagtcagtcagaagtttacattcactaagttgactgtgcctttcagcttggaaaattccagaaaatgatgtcatggctttagaagcttctgataggctaattggcataatttgagtcaattggaggtgtacctgtggatatatttcaaggcctaccttcaaactcagttcctctcTGCTTGACAttatgagaaaatcaaaagaaatcaaccaagacctcagaaaaaaatggtgacctcaagcatacttccaaaagttgtggcaaaatggcttaaggacaacaaattcaaggtattggagtggccatcacaaagccctgacctcaatcctatagaacatttgggggcagaactgaaaaagtgtgtgcgagtggTACTGCACTGCTGAGAACCATGAGTTCCAGCATCTTGCACATGAATTGGGAGCCATAGTTGCTCTCTTCCGTCCTGCCAGTTTGGTGGTGAGGAAGGTAAGGTATCTTATCTTGCGTGCCCCTGCCTGGTAAAACATCTGCGAAAAACTTAGCATGAATGCGTTCAGCTGGTCAAAAGGTTAGCGGAAAGCACTCCCTATCAGATTCATGATGTGAGCCATGCATGTTATGTGCAGAGAGTTGGGGAACAATGACTGAAGTGCAGCTTTGTAGGCTTTCATGTACGCAGCATTGTCTGTGTCAAAGACAATGAATTCGTCATCATTGGAGATATTGTAGTCTTGTAGACATTTGACAAACCGCCATGGAAACTGTTGAATGGTTGCACTGCTCCAGAAACACTGTCTCTGCAAGGTAGGCAAGAATTCTCCCAGAGGTATCCCTTTCAAGTGGTGCGATAAGGATGTTTAGTAGACATCTTACTTCAACATCTGGAGTTTCATCAAAGATGACTGTCACTGGTTTCCCTGCAAGATGTTGCTTGAGTTCTTCCTTCACCTTCAAGTAGACATCTCCCAAGTTTTCCTGTAACTGGTGATATCCAGGGATGGCACTTCCATTGATGACTTTCTCCTTCAGAAACTGCCTAATTGAGGGGTGATCACTTTTGAAACAGGGCATGTTGACTGCTGTGCAAGTGCGTACCCAATCTTCACAAATCTGAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC108241875

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1358685 True 2608 lncRNA 0.42 2 58614380 58617022

Neighbor

gene id symbol gene type direction distance location
LOC110538555 NA coding upstream 57314 58521363 ~ 58557066 (+)
LOC110486947 LOC106601860 coding upstream 168191 58428372 ~ 58446189 (+)
LOC118938097 NA coding upstream 265117 58348530 ~ 58349263 (+)
LOC110514297 gprc5b coding upstream 266837 58312756 ~ 58347543 (+)
LOC110486945 fa10 coding upstream 318992 58286258 ~ 58295388 (+)
LOC110518424 LOC106606554 coding downstream 112669 58729691 ~ 58762694 (+)
LOC110487024 LOC106606483 coding downstream 523048 59140048 ~ 59251086 (+)
LOC110487014 LOC106606516 coding downstream 635274 59252296 ~ 59259759 (+)
LOC110487018 LOC106606511 coding downstream 642940 59259962 ~ 59267092 (+)
LOC118938338 LOC106606494 coding downstream 929263 59546285 ~ 59624228 (+)
G1191075 NA non-coding upstream 10771 58594031 ~ 58603609 (+)
G1191068 NA non-coding upstream 29882 58575719 ~ 58584498 (+)
G1191041 NA non-coding upstream 38676 58573934 ~ 58575704 (+)
G1191042 NA non-coding upstream 43563 58492330 ~ 58570817 (+)
G1191008 NA non-coding upstream 102983 58448408 ~ 58511397 (+)
G1191073 NA non-coding downstream 7494 58624516 ~ 58626046 (+)
G1191091 NA non-coding downstream 13877 58630899 ~ 58645392 (+)
G1191108 NA non-coding downstream 44458 58661480 ~ 58666109 (+)
G1191128 NA non-coding downstream 90880 58707902 ~ 58708108 (+)
G1191309 NA non-coding downstream 183498 58800520 ~ 58800901 (+)
G1190689 NA other upstream 573085 58040886 ~ 58041295 (+)
G1190568 NA other upstream 619878 57950494 ~ 57994502 (+)
LOC110514101 LOC106606600 other upstream 973822 57522756 ~ 57640558 (+)
G1191444 NA other downstream 651049 59268071 ~ 59270262 (+)
G1191529 LOC106601890 other downstream 769150 59381313 ~ 59388776 (+)
G1191622 NA other downstream 1008813 59625835 ~ 59626661 (+)
LOC110486998 LOC106606498 other downstream 1296076 59912124 ~ 59920162 (+)
LOC110486993 LOC106606421 other downstream 1341232 59958192 ~ 59970372 (+)

Expression


Co-expression Network