XLOC_030886 (lztr1)


Basic Information

Item Value
gene id XLOC_030886
gene name lztr1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 12724046 ~ 12743212 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060052
CTCCTCCCTAGACGTCTATGGCTTATACACAGCAGCTTGAAGAAATGTTGTGGAATTGTTATTGACGTacatttcataatattatttcagttttataatATCAGCGAGATAAAATTGAAAAATTACGACTGCTATTATGCGATTGGATTATTGCAAACCGTAGCAGATGATAAATACACTTGTTGGTAACGTTAGGTCGTCAGATTTAAAGGTAACGCTAAGATTGTAAACACTAAGCTTTCTTAGCGGCAATATGATTTAGAATCTTGATGATCCCGAAGCAAATCAAACGTCTAGAAAACATGGAAGTACATTAATATTCGTCGTAAACCTGGCTCTTTAGTAGGACAAAGCCGCCTCGGATGTCATGGTTTCCTGGAGCCATGTCTTGTAAGTCTAAAGTAGCTCCCAGTGTGGATTTTGACCACAGCTGCTCTGACAGTGTTGAATATCTAACACTCAACTTCGGGCCTTTCGAGACTGTCCACCGCTGGAGAAGGCTGCCGCCGTGCGATGAGTTTGTGGGTGCAAGgcGTAGCAAGCATACCGTTGTGGCATACAGGGATGCCATATATGTCTTTGGAGGAGACAATGGCAAGAACATGCTTAATGACCTGTTGCGGTTTGACGTGAAGGATTGCTCATGGTGTCGGGCGTTTACTACTGGCACCCCACCAGCGCCGAGATATCACCACTCTGCTGTTGTGTATGGAAGCAGCATGTTTGTGTTTGGTGGCTACACTGGAGACATCTATTCAAACTCTAACTTAAAAAACAAGAACGACCTTTTTGAGTACAAGTTTGCCACCGGACAGTGGACAGAATGGAAAGTGGAAGGACGTTTGGTAGCCAGATCAGCTCATGGAGCCACGGTTTACAATGACAAACTCTGGATTTTTGCTGGATATGATGGAAATGCCAGGCTGAATGATATGTGGACCATCGGTCTTCAGGATCGTGAACAGGCATATTGGGAAGAGatCGAACAAAGTGGTGAAATCCCACCCTCCTGTTGTAACTTCCCAGTAGCCGTATGCCGGGATAAGATGTTTGTCTTCTCCGGCCAAAGTGGAGCCAAGATTACCAACAACCTGTTTCAGTTTGAATTCAAAGGCCACATATGGACACGTATCCCGACAGAGCACCTGCTGCGTGGCTCACCTCCACCCCCTCAAAGACGCTACGGACACACTATGGTGGCGTTTGACCGTCACCTGTATGTGTTTGGAGGGGCAGCAGACAACACTCTGCCCAATGAACTGCACTGCTACGACGTAGACTCGCAGACATGGGAGGTCATCCAGCCCAGCATAGACAGCGAGATGCCAAGTGGGAGGCTGTTCCATGCAGCAGCTGTTATCCACGATGCCATGTACATCTTTGGAGGAACAGTTGACAATAATGTACGCAGTGGAGAAATGTACAGATTCCAGTTTTCTTGTTATCCAAAGTGCACCCTTCATGAGGACTATGGCAAACTGTGGGAGAACCGTCAGTTCTGTGATGTCGAGTTTATCTTGGGGGAGAGGGAGGAGAAGGTCCTGGGTCATATTGCCATAGTAACGGCTCGCTGTAAATGGCTCCGTAAGAAGATTCTACAAGCCAGAGATAGACAGAAACAGAAGAGTAAACTGGAATGTAATGAGGAGAGTGATGAGTCTGGCTCAGGCAGTCAGAAGGACTGCTCTGGTAGGTCCTCGAGGGGTCCTCCTTTATTAGAAGTGTCAATCAGAGAAGCAGACGCTCAACCATTTGAGGTTTTGATGCAGTTTCTGTACACAGACAAGATACAGTACCCACGTAGAGGTCATGTCCAGGATGTGCTGTTGATAATGGACGTTTATAAACTTGCTCTGAGTTTTAAACTGTCCAGACTGGAGCAGCTCTGCGTTCAGTACATTGAAGCGTCAGTGGATCTGCAGAACGTCctgagtgtgtgtgaaaatgcagaCAAACTTCAGCTGGACCAGCTCAAGGAACATTGTCTGAACTTCGTGGTGAAGGAAAGTCACTTTAACCAGGTGATCATGACTAAAGAGTTTGAACACCTGTCCACTCCGCTCATTGTGGAGATCGTGAGACGCAAACAGCAGCCACCTCCCAGAGTCTATTCAGATCAGCCGGTGGAcatagGCACATCTCTGGTGCAGGACATGAAGGCTTATCTGGAAGGGGCGGGGCATGAGTTCTGTGACATCATCCTTTTGCTAGATGGTCATCCACGTCCTGCTCATAAGGCCATACTGGCTGCTCGCTCCAGTTATTTTGAGGCCATGTTTCGCTCCTTCATGCCAGAGGATGGGCAGGTGAACATTTCTATAGGAGAGATGGTTCCTAGTACACAGGCCTTTGAGTCCATGCTGCGCTACATTTACTATGGGGACGTCGACATGCCTCCAGAGGACTCACTATACCTCTTTGCTGCACCTTATTACTATGGTTTCTCCAACAACAGACTGCAGGCTTACTGCAAGCAAAATCTGGAGATGAACGTTACTGTAGAGAATGTCTTGCAGATCTTGGAAGCGGCTGATAAAACTCAAGCTCTGGACATGAAGAAACACTGCCTGCATATTATAGTGCATCAGTTCACCAAGGTTTCCAAGCTCCCCAACCTGCGATCGCTCAGCCAACCGCTGCTGTTGGACATCATTGACTCGCTGGCATCCCACATATCAGACAAACAGTGCACTGAGATGAGCTCTGATATTTAGACTCTCCTTCCCTTTCACGTCCCATCCTATCTTTTATGAGCTTTTCTTAATTTATGCTTCCACTCCATATCCTTCCCTTTTCATCCAGCACCTCCTCCCAACCTATTTAATCCTGCTTCACACCCGTCTACAATGAGATTGAGTCTACAATGAGATTGTTTGTAAAAAATGCTGCTTGTACATTTTAATGAAGCTTCGATTTGTTGCATTTGCAGATAGTTTTGCGTACATCAAATCACTTGACGGCCTAAGTATAATTAGGCATGTGTCCCACGTAATGAAAAGTGGTGTTTTCAAAGCTTTCATATAAAAAcccaaagaaaaacaattgatGTAGTCGACTCTTCTGTATATATAATCTATTCCACTTTTGTGCTTAACTAAAAGCATTGCAACAACTAGTACAAATATGATCATCCAGCAtctataaataactttttttttactctacaTACATTAAATAGAATATCAAATATTGATTTTGGCGATTTAAAAATGACCTGGACGTGACTTTCTGCACTTTACGAATACATCAGTAAATATTTATACCTGAACCGTAGTGACTCTATGCTGCTGTTGTTATCCTGATTTATGTCAGTGTTTGCCATTATGTAATAATATAGTTATATGAGCAGATAATCACAGCAACAGTCAATGTTAAGACTCGTGTATGCTTTACTGTAATCGTTGAGCAGTGTTCTGTTGGCCCTGTGGGCACTATGCCTTAATAAACTGTCCACCATC
>TCONS_00060053
AACGTTAGTGTGTCGGCTCCTCCCTAGACGTCTATGGCTTATACACAGCAGCTTGAAGAAATGTTGTGGAATTGTTATTGACGTacatttcataatattatttcagttttataatATCAGCGAGATAAAATTGAAAAATTACGACTGCTATTATGCGATTGGATTATTGCAAACCGTAGCAGATGATAAATACACTTGTTGGTAACGTTAGGTCGTCAGATTTAAAGGTAACGCTAAGATTGTAAACACTAAGCTTTCTTAGCGGCAATATGATTTAGAATCTTGATGATCCCGAAGCAAATCAAACGTCTAGAAAACATGGAAGTACATTAATATTCGTCGTAAACCTGGCTCTTTAGTAGGACAAAGCCGCCTCGGATGTCATGGTTTCCTGGAGCCATGTCTTGTAAGTCTAAAGTAGCTCCCAGTGTGGATTTTGACCACAGCTGCTCTGACAGTGTTGAATATCTAACACTCAACTTCGGGCCTTTCGAGACTGTCCACCGCTGGAGAAGGCTGCCGCCGTGCGATGAGTTTGTGGGTGCAAGgcGTAGCAAGCATACCGTTGTGGCATACAGGGATGCCATATATGTCTTTGGAGGAGACAATGGCAAGAACATGCTTAATGACCTGTTGCGGTTTGACGTGAAGGATTGCTCATGGTGTCGGGCGTTTACTACTGGCACCCCACCAGCGCCGAGATATCACCACTCTGCTGTTGTGTATGGAAGCAGCATGTTTGTGTTTGGTGGCTACACTGGAGACATCTATTCAAACTCTAACTTAAAAAACAAGAACGACCTTTTTGAGTACAAGTTTGCCACCGGACAGTGGACAGAATGGAAAGTGGAAGGACGTTTGGTAGCCAGATCAGCTCATGGAGCCACGGTTTACAATGACAAACTCTGGATTTTTGCTGGATATGATGGAAATGCCAGGCTGAATGATATGTGGACCATCGGTCTTCAGGATCGTGAACAGGCATATTGGGAAGAGatCGAACAAAGTGGTGAAATCCCACCCTCCTGTTGTAACTTCCCAGTAGCCGTATGCCGGGATAAGATGTTTGTCTTCTCCGGCCAAAGTGGAGCCAAGATTACCAACAACCTGTTTCAGTTTGAATTCAAAGGCCACATATGGACACGTATCCCGACAGAGCACCTGCTGCGTGGCTCACCTCCACCCCCTCAAAGACGCTACGGACACACTATGGTGGCGTTTGACCGTCACCTGTATGTGTTTGGAGGGGCAGCAGACAACACTCTGCCCAATGAACTGCACTGCTACGACGTAGACTCGCAGACATGGGAGGTCATCCAGCCCAGCATAGACAGCGAGATGCCAAGTGGGAGGCTGTTCCATGCAGCAGCTGTTATCCACGATGCCATGTACATCTTTGGAGGAACAGTTGACAATAATGTACGCAGTGGAGAAATGTACAGATTCCAGTTTTCTTGTTATCCAAAGTGCACCCTTCATGAGGACTATGGCAAACTGTGGGAGAACCGTCAGTTCTGTGATGTCGAGTTTATCTTGGGGGAGAGGGAGGAGAAGGTCCTGGGTCATATTGCCATAGTAACGGCTCGCTGTAAATGGCTCCGTAAGAAGATTCTACAAGCCAGAGATAGACAGAAACAGAAGAGTAAACTGGAATGTAATGAGGAGAGTGATGAGTCTGGCTCAGGCAGTCAGAAGGACTGCTCTGGTAGGTCCTCGAGGGGTCCTCCTTTATTAGAAGTGTCAATCAGAGAAGCAGACGCTCAACCATTTGAGGTTTTGATGCAGTTTCTGTACACAGACAAGATACAGTACCCACGTAGAGGTCATGTCCAGGATGTGCTGTTGATAATGGACGTTTATAAACTTGCTCTGAGTTTTAAACTGTCCAGACTGGAGCAGCTCTGCGTTCAGTACATTGAAGCGTCAGTGGATCTGCAGAACGTCctgagtgtgtgtgaaaatgcagaCAAACTTCAGCTGGACCAGCTCAAGGAACATTGTCTGAACTTCGTGGTGAAGGAAAGTCACTTTAACCAGGTGATCATGACTAAAGAGTTTGAACACCTGTCCACTCCGCTCATTGTGGAGATCGTGAGACGCAAACAGCAGCCACCTCCCAGAGTCTATTCAGATCAGCCGGTGGAcatagGCACATCTCTGGTGCAGGACATGAAGGCTTATCTGGAAGGGGCGGGGCATGAGTTCTGTGACATCATCCTTTTGCTAGATGGTCATCCACGTCCTGCTCATAAGGCCATACTGGCTGCTCGCTCCAGTTATTTTGAGGCCATGTTTCGCTCCTTCATGCCAGAGGATGGGCAGGTGAACATTTCTATAGGAGAGATGGTTCCTAGTACACAGGCCTTTGAGTCCATGCTGCGCTACATTTACTATGGGGACGTCGACATGCCTCCAGAGGACTCACTATACCTCTTTGCTGCACCTTATTACTATGGTTTCTCCAACAACAGACTGCAGGCTTACTGCAAGCAAAATCTGGAGATGAACGTTACTGTAGAGAATGTCTTGCAGATCTTGGAAGCGGCTGATAAAACTCAAGCTCTGGACATGAAGAAACACTGCCTGCATATTATAGTGCATCAGTTCACCAAGGTTTCCAAGCTCCCCAACCTGCGATCGCTCAGCCAACCGCTGCTGTTGGACATCATTGACTCGCTGGCATCCCACATATCAGACAAACAGTGCACTGAGATGAGCTCTGATATTTAGACTCTCCTTCCCTTTCACGTCCCATCCTATCTTTTATGAGCTTTTCTTAATTTATGCTTCCACTCCATATCCTTCCCTTTTCATCCAGCACCTCCTCCCAACCTATTTAATCCTGCTTCACACCCGTCTACAATGAGATTGAGTCTACAATGAGATTGAGTCATCACTAGATTTTATTTACCCAATTGTTTGTAAAAAATGCTGCTTGTACATTTTAATGAAGCTTCGATTTGTTGCATTTGCAGATAGTTTTGCGTACATCAAATCACTTGACGGCCTAAGTATAATTAGGCATGTGTCCCACGTAATGAAAAGTGGTGTTTTCAAAGCTTTCATATAAAAAcccaaagaaaaacaattgatGTAGTCGACTCTTCTGTATATATAATCTATTCCACTTTTGTGCTTAACTAAAAGCATTGCAACAACTAGTACAAATATGATCATCCAGCAtctataaataactttttttttactctacaTACATTAAATAGAATATCAAATATTGATTTTGGCGATTTAAAAATGACCTGGACGTGACTTTCTGCACTTTACGAATACATCAGTAAATATTTATACCTGAACCGTAGTGACTCTATGCTGCTGTTGTTATCCTGATTTATGTCAGTGTTTGCCATTATGTAATAATATAGTTATATGAGCAGATAATCACAGCAACAGTCAATGTTAAGACTCGTGTATGCTTTACTGTAATCGTTGAGCAGTGTTCTGTTGGCCCTGTGGGCACTATGCCTTAATAAACTGTCCACCATC
>TCONS_00060054
AGAGTGAATTTTTTAACTTGACTCTAAAATGAAAAGACAGCAAGTGGAAAGAAGGTTTCCAAGCTCCCCAACCTGCGATCGCTCAGCCAACCGCTGCTGTTGGACATCATTGACTCGCTGGCATCCCACATATCAGACAAACAGTGCACTGAGATGAGCTCTGATATTTAGACTCTCCTTCCCTTTCACGTCCCATCCTATCTTTTATGAGCTTTTCTTAATTTATGCTTCCACTCCATATCCTTCCCTTTTCATCCAGCACCTCCTCCCAACCTATTTAATCCTGCTTCACACCCGTCTACAATGAGATTGAGTCTACAATGAGATTGAGTCATCACTAGATTTTATTTACCCAATTGTTTGTAAAAAATGCTGCTTGTACATTTTAATGAAGCTTCGATTTGTTGCATTTGCAGATAGTTTTGCGTACATCAAATCACTTGACGGCCTAAGTATAATTAGGCATGTGTCCCACGTAATGAAAAGTGGTGTTTTCAAAGCTTTCATATAAAAAcccaaagaaaaacaa

Function

symbol description
lztr1 Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in Noonan syndrome 10; Noonan syndrome 2; and neurilemmomatosis. Orthologous to human LZTR1 (leucine zipper like transcription regulator 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005794 Golgi apparatus cellular_component

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-9564 Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in Noonan syndrome 10; Noonan syndrome 2; and neurilemmomatosis. Orthologous to human LZTR1 (leucine zipper like transcription regulator 1).

Ensembl:

ensembl_id ENSDARG00000015905

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060052 False 3458 mRNA 0.45 21 12724046 12743196
TCONS_00060053 False 3504 mRNA 0.44 20 12724046 12743212
TCONS_00060054 True 529 processed_transcript 0.40 2 12724462 12725315

Neighbor

gene id symbol gene type direction distance location
XLOC_030885 si:dkey-98f17.3 coding downstream 10126 12713258 ~ 12713920 (-)
XLOC_030884 aifm3 coding downstream 22443 12637823 ~ 12701603 (-)
XLOC_030883 vsig10 coding downstream 136993 12562188 ~ 12587053 (-)
XLOC_030882 wsb2 coding downstream 163477 12549551 ~ 12560569 (-)
XLOC_030881 BX276096.2 coding downstream 357721 12366209 ~ 12366325 (-)
XLOC_030887 p2rx2 coding upstream 64690 12807902 ~ 12824607 (-)
XLOC_030888 NA coding upstream 92314 12835526 ~ 12836607 (-)
XLOC_030889 ypel1 coding upstream 293894 13037106 ~ 13086616 (-)
XLOC_030890 mapk1 coding upstream 361639 13104851 ~ 13167120 (-)
XLOC_030891 ppm1f coding upstream 437817 13181029 ~ 13206878 (-)
XLOC_030880 CR735143.1 non-coding downstream 531032 12192898 ~ 12193014 (-)
XLOC_030876 castor1 non-coding downstream 692125 11982364 ~ 12031921 (-)
XLOC_030871 NA non-coding downstream 1060718 11576673 ~ 11663328 (-)
XLOC_030869 NA non-coding downstream 1257893 11356637 ~ 11466153 (-)
XLOC_030893 NA non-coding upstream 534029 13277241 ~ 13306705 (-)
XLOC_030896 AL954191.1 non-coding upstream 789662 13532874 ~ 13532988 (-)
XLOC_030905 CR388049.1 non-coding upstream 1501937 14245149 ~ 14245280 (-)
XLOC_030911 NA non-coding upstream 2037630 14780842 ~ 15176098 (-)

Expression


Co-expression Network