XLOC_030888


Basic Information

Item Value
gene id XLOC_030888
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 12835526 ~ 12836607 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061527
GTATAGTAGctattctatctatctgtctatctatctatctatctatctatctatctatctatctatctatctatctatctatctctgtctatctatctgtttgtctgtctgtctgtctgtctgtctgtttgtagaaaaaaaatgctgggctgcacacaattcctttattttgtgagagaacttaattgtttttgcaaatgtaagtagattgaacataaacaattaagttgcctcCTAAAAAAACTTTGTGAATGTTgtgaattgtgttgatttagctcattttaatggGGTGGTCCACTATGTTATCATATTCTAAACTTTAGTTGatttgtaatgtagctgtgtgaacataaacagcatctctgattGTGGAATAAATCTTTATGAAAGGGGCTGTTTGTCAgatagaagtaaagttggttttatatttgcacattcgcaCTTACGCTCCCctaataaaatattagaaaactaTTGTTTGCAAATTCCAAATAGCGAAATCACACTAGCAGACAACTATTATCAAACTACAACAGCGTTCATGGTCAAAGAAATCATGCTAGTGTTGTTTGAAGTGTTacttacatgcgatttcagaccgaatattcaatatCGCGTGAAAAACAACAAAGGGACCGAGTCAAAAGTTCTCAGGTTGTTGAAAAACGAACAAAAGGAATTCAGCCAACTACTATAACGGTTTTGAAATCATGGCCTGTGCACATCAACATCTGTGGACCCTGCAGAACATGCATGCAACCTGTGCCCTGCTGTTTTCCTTACCTCTGTCTTACCCATTGTCTTAACTAAATATTGTAACACTGTCATTtctgttttttctgtttatgACATGTTGTTGTACATTAAAC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008312 7S RNA binding molecular_function
GO:0045294 alpha-catenin binding molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061527 True 869 lncRNA 0.35 2 12835526 12836607

Neighbor

gene id symbol gene type direction distance location
XLOC_030887 p2rx2 coding downstream 10919 12807902 ~ 12824607 (-)
XLOC_030886 lztr1 coding downstream 92314 12724046 ~ 12743212 (-)
XLOC_030885 si:dkey-98f17.3 coding downstream 121606 12713258 ~ 12713920 (-)
XLOC_030884 aifm3 coding downstream 133923 12637823 ~ 12701603 (-)
XLOC_030883 vsig10 coding downstream 248473 12562188 ~ 12587053 (-)
XLOC_030889 ypel1 coding upstream 200499 13037106 ~ 13086616 (-)
XLOC_030890 mapk1 coding upstream 268244 13104851 ~ 13167120 (-)
XLOC_030891 ppm1f coding upstream 344422 13181029 ~ 13206878 (-)
XLOC_030892 top3b coding upstream 374845 13211452 ~ 13251907 (-)
XLOC_030893 NA coding upstream 440634 13277241 ~ 13306705 (-)
XLOC_030881 BX276096.2 non-coding downstream 469201 12366209 ~ 12366325 (-)
XLOC_030880 CR735143.1 non-coding downstream 642512 12192898 ~ 12193014 (-)
XLOC_030876 castor1 non-coding downstream 803605 11982364 ~ 12031921 (-)
XLOC_030871 NA non-coding downstream 1172198 11576673 ~ 11663328 (-)
XLOC_030869 NA non-coding downstream 1369373 11356637 ~ 11466153 (-)
XLOC_030896 AL954191.1 non-coding upstream 696267 13532874 ~ 13532988 (-)
XLOC_030905 CR388049.1 non-coding upstream 1408542 14245149 ~ 14245280 (-)
XLOC_030911 NA non-coding upstream 1944235 14780842 ~ 15176098 (-)
XLOC_030912 NA non-coding upstream 2163015 14999622 ~ 14999996 (-)

Expression


Co-expression Network