Fish Transcriptome and Expression Database

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model fish

XLOC_030896 (AL954191.1)

Basic Information

Item	Value
gene id	XLOC_030896
gene name	AL954191.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007116.7
NCBI id	CM002889.2
chromosome length	72500376
location	13532874 ~ 13532988 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060070
ACTGTTagctagctttctgcaactctcacatggtcgcccaccaaagctaagcagggctgcgcatggtcagtacctgaatgggagaccacattgcaaagctaggttgctgcccgTA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000114308

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00060070	True	115	rRNA	0.53	1	13532874	13532988

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_030895	ube2l3b	coding	downstream	178969	13337507 ~ 13353905 (-)
XLOC_030894	sdf2l1	coding	downstream	217148	13308531 ~ 13315726 (-)
XLOC_030893	NA	coding	downstream	226169	13277241 ~ 13306705 (-)
XLOC_030892	top3b	coding	downstream	280967	13211452 ~ 13251907 (-)
XLOC_030891	ppm1f	coding	downstream	325996	13181029 ~ 13206878 (-)
XLOC_030897	si:ch211-230g14.3	coding	upstream	30310	13563298 ~ 13564961 (-)
XLOC_030898	purba	coding	upstream	110179	13643167 ~ 13646054 (-)
XLOC_030899	zgc:65851	coding	upstream	138626	13671614 ~ 13685047 (-)
XLOC_030900	mxd1	coding	upstream	173971	13706959 ~ 13766651 (-)
XLOC_030901	snrnp27	coding	upstream	234755	13767743 ~ 13778726 (-)
XLOC_030888	NA	non-coding	downstream	696267	12835526 ~ 12836607 (-)
XLOC_030881	BX276096.2	non-coding	downstream	1166549	12366209 ~ 12366325 (-)
XLOC_030880	CR735143.1	non-coding	downstream	1339860	12192898 ~ 12193014 (-)
XLOC_030876	castor1	non-coding	downstream	1500953	11982364 ~ 12031921 (-)
XLOC_030905	CR388049.1	non-coding	upstream	712161	14245149 ~ 14245280 (-)
XLOC_030911	NA	non-coding	upstream	1247854	14780842 ~ 15176098 (-)
XLOC_030912	NA	non-coding	upstream	1466634	14999622 ~ 14999996 (-)
XLOC_030913	CR936518.1	non-coding	upstream	1653835	15186823 ~ 15215784 (-)
XLOC_030915	NA	non-coding	upstream	1774551	15307539 ~ 15310108 (-)

Expression

Co-expression Network