XLOC_030913 (CR936518.1)


Basic Information

Item Value
gene id XLOC_030913
gene name CR936518.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 15186823 ~ 15215784 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060100
CGCCACTAATTCAGTCAtttgagttttatttaaaaataaagattttacttttaaaatataataaatattaagaaaatattaaaatagttttttttctgtcaaggGTGATATATTTTTGTTTGGAGGTTGAAATAAGCCCAATTACAATCCTCTGTTGAATAATGCATCTCTAATTTCTGTCCAAATCAAACATTTCTGAAGGTCTGAGGAGAACAAAAACAGCTTGTTGCATTTCCTCCAAGTAAGGAAATTGATAAAGCTTCTTGCAAAAACTGTAGAAGAACTGCAAATGCTAACCGAACAAGTTTAAaggtaaaatatttaatgtttattttacaagttCAGCACAGCcattctgttcatttatttatttgaattgctgTACGTCAGTGCCACGTTACAAGCTTCACGGATCTGCTAAAGGTGGTCTAGCATTttcccgaaaaaaaaaaaaagaattaaaaatcagGGCATTTCAGCACCTTCAAAACAGCGCGACATGCAAATAATCCATCTATCTAGAAGCTCAATGGCTCAagggtaatatatatataacttatggctttttaaaagcaaaaacaaaaaagtgcatCCAACACAAAAGTTCAATTCCAGTCCGTGATAATGCATCATTTGTCTAAAGAAGTCCTCCTCATATCTCCAAACACTAGTTATACTGCAGTTTCCCAGTGGCCTTTCATTGTCTGATTCTGAGTTCACAGGCCGTCCGGAGCAAATGTTGTCCACATGCTCCACAAGGACATTTGTGACATCTCTCCCTTCAATAAATATGGCAGCTCCTCTTCTCGTCCGTCAGAAGCCACTACAAAAGATGTGTCCAATCCAAAACTCAACAAGTGAGTCCAAGACAcaaagttttcCAAAAAGCTGCAGCTCCCCTTTGTGGTCCAGCAGTGATCTGCAGTGAAATGGATGGACACAGACAGATGGGAAGGGAATGTGGGAACCCTGTTTTGTGTCAGCCAGGAGTTATTCGCTATCAAAG

Function

GO:

id name namespace
GO:0001510 RNA methylation biological_process
GO:0098536 deuterosome cellular_component
GO:0008173 RNA methyltransferase activity molecular_function
GO:0015095 magnesium ion transmembrane transporter activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097046

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060100 True 1006 lncRNA 0.37 2 15186823 15215784

Neighbor

gene id symbol gene type direction distance location
XLOC_030911 NA coding downstream 10725 14780842 ~ 15176098 (-)
XLOC_030912 NA coding downstream 186827 14999622 ~ 14999996 (-)
XLOC_030910 sema4c coding downstream 538390 14529101 ~ 14648433 (-)
XLOC_030909 si:ch211-244o22.2 coding downstream 664111 14477282 ~ 14522712 (-)
XLOC_030908 kat6a coding downstream 743699 14394323 ~ 14443124 (-)
XLOC_030914 gnb1l coding upstream 6227 15222011 ~ 15283509 (-)
XLOC_030915 NA coding upstream 91755 15307539 ~ 15310108 (-)
XLOC_030916 txnrd2.1 coding upstream 95807 15311591 ~ 15350252 (-)
XLOC_030917 taok3a coding upstream 144211 15359995 ~ 15494297 (-)
XLOC_030918 CU694999.1 coding upstream 307224 15523008 ~ 15524782 (-)
XLOC_030905 CR388049.1 non-coding downstream 941543 14245149 ~ 14245280 (-)
XLOC_030896 AL954191.1 non-coding downstream 1653835 13532874 ~ 13532988 (-)
XLOC_030893 NA non-coding downstream 1880118 13277241 ~ 13306705 (-)
XLOC_030920 BX649391.1 non-coding upstream 518741 15734525 ~ 15734580 (-)
XLOC_030921 NA non-coding upstream 597991 15813775 ~ 15817557 (-)
XLOC_030926 NA non-coding upstream 1063456 16279240 ~ 16351306 (-)
XLOC_030927 NA non-coding upstream 1137213 16352997 ~ 16356940 (-)

Expression


Co-expression Network