G1196024 (LOC106601477)


Basic Information

Item Value
gene id G1196024
gene name LOC106601477
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 64627422 ~ 64668426 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1364733
ATCATCTGAGAATTCATTCAGGGGAGAGGCCTTACCCCTGCCTTGATTGTGGGAAAAGCTTTGCTTTTTTGGGCGCCCTAAACATACACAAGCTAACACACACTGGagtgaagccttatagctgtgatcaatgtgggaagagtttcagtcAGTCTGGCCACCTGACAACACACCAACTAACACACACTGGAGTGAAGCCttttagctgtgatcagtgtgggaagagctttgctctAACTTCCTCCCTGACTAGACACCAGCgtacacacactggagagaaaccttatgtctgtctatgtgggaagagctttgctgtaGCTTCCAATCTGACtacacaccagcgaacacacaccaGAGATAAGCCTTATAGTTGTtatcagtgtggaaagagctttgctTCTTCAGAAACACTAATTATACACCAGCGCATACACACAGCAAAGAAACCTTTTTGCTGtggtcagtgtgggaagagctttgctgtaGCTTTCTCCCTGATtatacaccagcgaacacacactggcGAGAAGCCTTATacctgtgatcagtgtgggaagagcttcagtcAATCAGTACACCTGAAtacacaccagcgaacacacacaggagagaatccttatagctgtgatcagtgtggaaagagtttcagtCAATCAGGGACCCTAAAttcacaccagcgaacacacactggagagaaaccataTGTCTGTTtttgtgggaagagctttgctcaTTTAGGGCCAATGAAAAAACACCAGAAAACTAAAACGTGCCatatttcctctccctcctatctgTCACCGGTTCCAGATCCATAAATAAAGGATCAATAGAAAACATATATTGAACAGTCATATCCATCTCCCATTAAACAGTTGCTTTAGTCTGATCA
>TU1364732
ATCATCTGAGAATTCATTCAGGGGAGAGGCCTTACCCCTGCCTTGATTGTGGGAAAAGCTTTGCTTTTTTGGGCGCCCTAAACATACACAAGCTAACACACACTGGagtgaagccttatagctgtgatcaatgtgggaagagtttcagtcAGTCTGGCCACCTGACAACACACCAACTAACACACACTGGAGTGAAGCCttttagctgtgatcagtgtgggaagagctttgctctAACTTCCTCCCTGACTAGACACCAGCgtacacacactggagagaaaccttatgtctgtctatgtgggaagagctttgctgtaGCTTCCAATCTGACtacacaccagcgaacacacaccaGAGATAAGCCTTATAGTTGTtatcagtgtggaaagagctttgctTCTTCAGAAACACTAATTATACACCAGCGCATACACACAGCAAAGAAACCTTTTTGCTGtggtcagtgtgggaagagctttgctgtaGCTTTCTCCCTGATtatacaccagcgaacacacactggcGAGAAGCCTTATacctgtgatcagtgtgggaagagcttcagtcAATCAGTACACCTGAAtacacaccagcgaacacacactggagagaaaccttagaTGTGTGGAAAGCTTTGTTCATTTAGGGCCTATGTGGAAAAACACCAGAAAACTGAAAATGTCTTGTATTTAATTTGCCTCCTATCTGACA

Function

NR:

description
zinc finger protein 664-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1364733 False 892 lncRNA 0.45 2 64627422 64668426
TU1364732 True 711 lncRNA 0.45 2 64667632 64668426
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110487475 NA coding downstream 2682 64614816 ~ 64624740 (-)
LOC110485289 NA coding downstream 15834 64601975 ~ 64611588 (-)
LOC110513427 NA coding downstream 27400 64582089 ~ 64600022 (-)
LOC110487483 LOC106606297 coding downstream 40993 64573294 ~ 64586429 (-)
LOC110513418 NA coding downstream 55865 64560886 ~ 64571557 (-)
LOC110487480 LOC106606286 coding upstream 130230 64798656 ~ 64945651 (-)
LOC118938356 NA coding upstream 283117 64951543 ~ 64954224 (-)
LOC110487107 LOC106606311 coding upstream 284228 64952654 ~ 64963823 (-)
LOC118936529 LOC105012854 coding upstream 300750 64969176 ~ 65045461 (-)
LOC118938357 LOC106595583 coding upstream 819522 65487948 ~ 65503404 (-)
G1196056 NA non-coding downstream 5155 64621635 ~ 64622267 (-)
G1196021 LOC106606290 non-coding downstream 11453 64594208 ~ 64615969 (-)
G1196025 NA non-coding downstream 26014 64560247 ~ 64601408 (-)
G1196032 NA non-coding downstream 44868 64548840 ~ 64582554 (-)
G1196027 NA non-coding downstream 66712 64548037 ~ 64560710 (-)
G1196085 NA non-coding upstream 39927 64708353 ~ 64728928 (-)
G1196016 NA non-coding upstream 82224 64750650 ~ 64771549 (-)
G1196108 NA non-coding upstream 114720 64783146 ~ 64785072 (-)
G1196112 NA non-coding upstream 124402 64792828 ~ 64793587 (-)
G1195997 NA other downstream 150050 64476970 ~ 64477372 (-)
LOC110487482 LOC106606373 other downstream 280015 64334669 ~ 64362841 (-)
G1195624 NA other downstream 681658 63945076 ~ 63945764 (-)
LOC110485277 LOC106602060 other downstream 1121898 63495359 ~ 63509387 (-)
G1194933 NA other downstream 1489700 63137040 ~ 63137722 (-)
G1196113 NA other upstream 126222 64794648 ~ 64795071 (-)
G1196205 LOC106606311 other upstream 283364 64951790 ~ 64963785 (-)
G1196208 NA other upstream 288852 64957278 ~ 64961176 (-)
G1196409 NA other upstream 584853 65253279 ~ 65254078 (-)
G1196536 emp2 other upstream 801021 65446633 ~ 65472652 (-)

Expression

G1196024(LOC106601477) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: -0.5 to 0.5.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020032 si:ch73-92e7.4 coding NC_007133.7 CM002906.2 2533514 ~ 2538691 (+)