G1196311


Basic Information

Item Value
gene id G1196311
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 65100974 ~ 65106227 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1365141
gccctgtgtaactcccaatcacggacggttgtgatacagcctggaattgaaccagggtctgtactgatgcctctagcactgagatgcagtgccttagaccgctacacCACTTGGGAGCCAACCTTCAATACCAGGGGaaggcaaccctgttcctggagtgccacAGaACTCACccgacagccagccagacatggGCTGCTGCTTCAGCGGGTCTgacggggaaggagagggggacacGAAGCACAGGGGGGACAGCGGCTGTAAGACGTGCTGTCTGAAGACCAGGAACTGCGTGATGAGTGGAGAGTGTGGGCGGGCTCTTCAGATTGCCAACGTCTGTGCCATGTGTGGAATGTGCATCCGCATGTTTGTCTAGCTGTGACTCCCTGAGGTCAGACCTGCTCTCATTCCCATGGCAGCTGTACAGAGAGCTATGAACAATAGGACCGGTATGCCACTCTCCCATGGGTGGATCACCTGGGATCCAGCCATCTAACAAGACACACACCCTGGACCCGCCCTGTGCCTTACAGCCAATAGAATCAGCACCCTGGAGCCAAGCAGGAAGGCATGTGACGCG

Function

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 15-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1365141 True 580 lncRNA 0.57 3 65100974 65106227
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118936529 LOC105012854 coding downstream 55513 64969176 ~ 65045461 (-)
LOC110487107 LOC106606311 coding downstream 137151 64952654 ~ 64963823 (-)
LOC118938356 NA coding downstream 146750 64951543 ~ 64954224 (-)
LOC110487480 LOC106606286 coding downstream 155323 64798656 ~ 64945651 (-)
LOC110486630 LOC106601477 coding downstream 425941 64667592 ~ 64675033 (-)
LOC118938357 LOC106595583 coding upstream 381721 65487948 ~ 65503404 (-)
LOC118938101 LOC106603827 coding upstream 1113838 66220065 ~ 66267701 (-)
LOC118938102 LOC106603753 coding upstream 1118923 66225150 ~ 66385923 (-)
LOC118938480 NA coding upstream 1317370 66423597 ~ 66424229 (-)
LOC118938476 LOC106603753 coding upstream 1328162 66434389 ~ 66435647 (-)
G1196322 NA non-coding downstream 24918 65075726 ~ 65076056 (-)
G1196242 NA non-coding downstream 60615 65039857 ~ 65040359 (-)
G1196239 NA non-coding downstream 70943 65029192 ~ 65030031 (-)
G1196236 NA non-coding downstream 77787 65022739 ~ 65023187 (-)
G1196234 NA non-coding downstream 83186 65017224 ~ 65017788 (-)
G1196359 NA non-coding upstream 79176 65185403 ~ 65186626 (-)
G1196389 NA non-coding upstream 130440 65236667 ~ 65238604 (-)
G1196394 NA non-coding upstream 136365 65242592 ~ 65242847 (-)
G1196397 NA non-coding upstream 138382 65244609 ~ 65244842 (-)
G1196398 NA non-coding upstream 139127 65245354 ~ 65245576 (-)
G1196205 LOC106606311 other downstream 137189 64951790 ~ 64963785 (-)
G1196208 NA other downstream 139798 64957278 ~ 64961176 (-)
G1196113 NA other downstream 305903 64794648 ~ 64795071 (-)
G1195997 NA other downstream 623602 64476970 ~ 64477372 (-)
LOC110487482 LOC106606373 other downstream 753567 64334669 ~ 64362841 (-)
G1196409 NA other upstream 147052 65253279 ~ 65254078 (-)
G1196536 emp2 other upstream 363220 65446633 ~ 65472652 (-)
G1196797 NA other upstream 684496 65790723 ~ 65795435 (-)
G1196818 NA other upstream 751591 65857818 ~ 65859372 (-)

Expression

G1196311 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 100.
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G1196311 Expression in each Bioproject

Bar chart with 21 bars.
G1196311 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G251907 NA non-coding CI01000059 null 1777798 ~ 1778031 (-)