G1196536 (emp2)


Basic Information

Item Value
gene id G1196536
gene name emp2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 65446633 ~ 65472652 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1365419
aaaaAACAGGCTGATATGTCACAGTCTCATTCCAACCACACAGTGTGGAGAAAACGTCTTTTAAAAACAGCCACTCTTAACAACAACATGTTTTAGAGTTACCTTTTTAGCTAATAGACTGTTAGTTTACACACTTCCTCTGTTCAATTATAACGTGTTTTGTGTCTTGTAGAGATACGAGTGTTTTATTTGCGTTTCCTCAACACCAGATACATGAGTCCACTGAAGACAGTCATGGGGAAACTGATCCAGGCCAGGACGTAGGATGAACCGTATCCTCCCTTCCTTAGAGACTCCTCCGTAAAACTCTCCCTCTGCGCCGTGTATATGGACGCTCCGATCATCACACACAggcCAGCCATTAGCTGGATGATGGCTGTAAAGACAAATCTCTCTCCTTGTTTCAGTTTGAAGAGCTGAAGGATGAACACAAAGAAACCCACGCAGCAGAGAATTGTGGACAGGATCATAGTGGCCTGGACAGCCTGTAGATAGACTGCGTCAGTGGAAGCGCCGTTCTTGACAGGGAGACATGTTACGTTACAGGAGTACCACAGGTCGGTGTAAATCACGTTGCCTCCTGGAGCAGACGCCACCCACCATGCATTGTTGATGGtgctgatgaagaggaggatgactgaGATGAcgtggaagaggaggatgaaggttAAAATCACCAACATGTCTGTCTGTTACACGggaacCAAATGAACTGTAGAACGGGGCAGCAGAGCTCAGACGTCgcgctggagagagagatgtagtagAAACGTGACCGTAGGTTGGCTTGGTCGTAGTATTAAGAGAAGTAGCGGTGCGCGACCCCGGCTACTGTGTCGTGTACGCGCCGGACTCTGTGGTTGGGTGTGGTCTGTAAATTCTGTCCTGTGTTGTCGGGAGgagcacggagagagagagagaacacggagtgttcacaaacacaaacacaccccacagagagagaacacagagtgttcacaaacacaaacacaccccacagagcccaaggacagcagcacaattagacccaaccaaatcatgagaaaacaaaaagataattacttgacacattgaaaagaattaacaaaaaaacagagcaaactagaatgctatttggccctaaacagagagtacacagtggcagaatacctgaccactgtgactgacccaaacttaaggaaaactttgactatgtacagactcagtgagcatagccttgctattgagaaaggccgccgtaggcagacatggctctcaag
>TU1365418
GTTATAACAGACTGTGTCTATGGGACGTCTGACCCCTGTTATAACAGACTGTGTCTATGGGACGTCTCCACTATAGACCCCTGTTATAACAGACTGTGTCTATGGGACCCACTATAGACCCCTGTTATAACAGACTGTGTCTATGGGACGTCCCCACTATAGACCCCTGTTATAACAGACTGTGTCTATGGGACCCACTATAGACCCCTGTTATAACAGACTGTGTCTATGGGACGTCCCCACTATAGACCCCTGTTATAACAGACTGTGTCTATGGGACCCACTACAGACCCCTGTTATAACAGACTGTGTCTATGGGACGCCCCCACTATAGACCCCTGTTATAACAGACTGTGTCTATGGGACGTCTCCACTATAGACCCCTGTTATAACAGACTGTCTATGGGACCCACTATAGACCCTGTTATAACAGACTGTGTCTATGGGACCCACTATAGACCACTGTTATAACAGACTGTGTCTATGGGACCCACTATAGACCCTGTTATAACAGACTGTGTCTATGGGACCCACTATAGACCCCTGTTATAACAGACTGTGTCTATGGGACCCACTATAGACCCCTGTTATAACAGACTGTGTCTATGGGACCCACTATAGACCCCTGTTATAACAGACTGTGTCTATGGGACGCCCCCACTATAGACCCCTGTTATAACAGACTGTGTCTATGGGACGTCTCCACTATAGACCCCTGTTATAACAGACTGTCTATGGGACCCACTATAGTGGTTGTATTGTATCAGTGAAGACTCAGACCCCTGTTATAACAGACTGTCTATGGGACCCACTATAGTGGTTGTATTGTATCAGTGAAGACTCAGACCCCTGTTATAACAGACTGTCTATGGGACCCACTATAGTGGTTGTATTGTATCAGTGAAGACTCAGACCCCTGTTATAACAGACTGTCTATGGGAACCACTATAGTGGTTGTATTGTATCAGTGAAGACTCAGACTCCGTGTTCTAGTGGGTCCCATTCTGTTTTTATTCCAGTTAGATAGTGGATCATCCTTATCCCCCTATTCTTTAATGTCCTCGATATTAACCTCAGCATCTTTcatcagacagactgacagggaggcagacagGccggcagggagggagacaggccggcagggagggagggaggcagacggacagggagggaggaaggcagaCGGACAggccagcagggagggagggaggcaggccggcagggagggaggcagacggacagggagggaggcagacgtacagatggggagggagggaggcagacagacagatggacaggccagcagggagggaggcagacagacagatggtccGGAAGACAATCCTATATATTCCACCTTCTACACTAGGTTTACTCTAGTAGAACTATACACAGTGTTGTCCTGCTCAGTCTTAACCATCGTTCATCATGCAATTCAACTATACACCATTTATTGGTCCATTGTTTATTCAAATTTACAGCATTGACGTCACCATGGAAACTCCACGCCCAAACTCCAtcccacccccccacccaaaaAACAGGCTGATATGTCACAGTCTCATTCCAACCACACAGTGTGGAGAAAACGTCTTTTAAAAACAGCCACTCTTAACAACAACATGTTTTAGAGTTACCTTTTTAGCTAATAGACTGTTAGTTTACACACTTCCTCTGTTCAATTATAACGTGTTTTGTGTCTTGTAGAGATACGAGTGTTTTATTTGCGTTTCCTCAACACCAGATACATGAGTCCACTGAAGACAGTCATGGGGAAACTGATCCAGGCCAGGACGTAGGATGAACCGTATCCTCCCTTCCTTAGAGACTCCTCCGTAAAACTCTCCCTCTGCGCCGT

Function

symbol description
emp2 Involved in regulation of glomerular filtration. Predicted to be located in cytoplasm and nucleus. Predicted to be active in plasma membrane. Is expressed in blood vessel; orbit; pectoral fin; pharyngeal arch; and pronephros. Human ortholog(s) of this gene implicated in nephrotic syndrome type 10. Orthologous to human EMP2 (epithelial membrane protein 2).

NR:

description
epithelial membrane protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1365419 False 1259 lncRNA 0.47 5 65446633 65469769
TU1365418 True 1858 TUCP 0.48 3 65469447 65472652
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118936529 LOC105012854 coding downstream 401172 64969176 ~ 65045461 (-)
LOC110487107 LOC106606311 coding downstream 482810 64952654 ~ 64963823 (-)
LOC118938356 NA coding downstream 492409 64951543 ~ 64954224 (-)
LOC110487480 LOC106606286 coding downstream 500982 64798656 ~ 64945651 (-)
LOC110486630 LOC106601477 coding downstream 771600 64667592 ~ 64675033 (-)
LOC118938357 LOC106595583 coding upstream 18179 65487948 ~ 65503404 (-)
LOC118938101 LOC106603827 coding upstream 750296 66220065 ~ 66267701 (-)
LOC118938102 LOC106603753 coding upstream 755381 66225150 ~ 66385923 (-)
LOC118938480 NA coding upstream 953828 66423597 ~ 66424229 (-)
LOC118938476 LOC106603753 coding upstream 964620 66434389 ~ 66435647 (-)
G1196469 NA non-coding downstream 114151 65331581 ~ 65332482 (-)
G1196467 NA non-coding downstream 120267 65326089 ~ 65326366 (-)
G1196455 NA non-coding downstream 156598 65289296 ~ 65290035 (-)
G1196419 NA non-coding downstream 179011 65267277 ~ 65267622 (-)
G1196402 NA non-coding downstream 198888 65247506 ~ 65247745 (-)
G1196551 NA non-coding upstream 15274 65485043 ~ 65485275 (-)
G1196552 NA non-coding upstream 15826 65485595 ~ 65486068 (-)
G1196553 NA non-coding upstream 26552 65496321 ~ 65497084 (-)
G1196554 NA non-coding upstream 31722 65501491 ~ 65501786 (-)
G1196558 NA non-coding upstream 44327 65514096 ~ 65514332 (-)
G1196409 NA other downstream 192555 65253279 ~ 65254078 (-)
G1196205 LOC106606311 other downstream 482848 64951790 ~ 64963785 (-)
G1196208 NA other downstream 485457 64957278 ~ 64961176 (-)
G1196113 NA other downstream 651562 64794648 ~ 64795071 (-)
G1195997 NA other downstream 969261 64476970 ~ 64477372 (-)
G1196797 NA other upstream 320954 65790723 ~ 65795435 (-)
G1196818 NA other upstream 388049 65857818 ~ 65859372 (-)
G1196805 NA other upstream 410457 65880226 ~ 65920222 (-)
G1196890 NA other upstream 582881 66052650 ~ 66053067 (-)

Expression

G1196536(emp2) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
End of interactive chart.

G1196536(emp2) Expression in each Bioproject

Bar chart with 20 bars.
G1196536(emp2) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.

Co-expression Network