G1197903 (LOC106603827)


Basic Information

Item Value
gene id G1197903
gene name LOC106603827
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 66368056 ~ 66374151 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1367265
TTGTTTGGGAGAATAAACCAAATGCATCTGCCATTGTCCTTCTACACTACTGGTGTTAAATTAACAGTGTGTTTGGGAAGTCATGATGATCTCTTTGTCATGCTGTCAGGCTgtggagtcacagaggaaggctgtgcttctctggtctcagctctggagtcaaacccctcacacctgagagagctggacctgagtaacaatgacctgaaggattcaggagtgaagctgctctctgctggactgaagaatccccactgtaaactggagactctgaggctgtcaggctgtctagtcacagaggaaggctgtgcttctctggtctcagctctgaggtcaaacccctcacacctgagagagctggacctgagctacaatcacccaggagactcaggagtcagactgctctctgctggactggaggatccacactgcagactggagaaactcaatgtggaacatggtggagagaacagaatgaaacctgggcttagaaaatatgtctgtgatctcacactggacctaaacacagtaaacagactcctctctctgtctgaggagaacagaaaggtgacatgtaggagagagaagcagccgtatcctgatcacccagagagatttgaggTCTGTGGacaggtgctgtgtagagagggtctgactgggcgctgttactgggaggtagagtggagt

Function

NR:

description
NLR family CARD domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1367265 True 687 TUCP 0.50 4 66368056 66374151

Neighbor

gene id symbol gene type direction distance location
LOC118938101 LOC106603827 coding downstream 145150 66220065 ~ 66267701 (-)
LOC118938357 LOC106595583 coding downstream 864664 65487948 ~ 65503404 (-)
LOC118936529 LOC105012854 coding downstream 1322595 64969176 ~ 65045461 (-)
LOC110487107 LOC106606311 coding downstream 1404233 64952654 ~ 64963823 (-)
LOC118938356 NA coding downstream 1413832 64951543 ~ 64954224 (-)
LOC118938480 NA coding upstream 49446 66423597 ~ 66424229 (-)
LOC118938476 LOC106603753 coding upstream 60238 66434389 ~ 66435647 (-)
LOC110519882 LOC106603827 coding upstream 303180 66677331 ~ 66679483 (-)
LOC118938475 LOC106603827 coding upstream 377641 66751792 ~ 66775949 (-)
LOC110513226 LOC106606280 coding upstream 413295 66787446 ~ 66789545 (-)
G1198021 NA non-coding downstream 12472 66354620 ~ 66355584 (-)
G1198008 NA non-coding downstream 38918 66286275 ~ 66329138 (-)
G1198013 NA non-coding downstream 56178 66311088 ~ 66311878 (-)
G1198012 NA non-coding downstream 57780 66309722 ~ 66310276 (-)
G1198006 NA non-coding downstream 80694 66285466 ~ 66287362 (-)
G1198033 NA non-coding upstream 15103 66389254 ~ 66389646 (-)
G1198034 NA non-coding upstream 19306 66393457 ~ 66398456 (-)
G1198035 NA non-coding upstream 26189 66400340 ~ 66401076 (-)
G1198037 NA non-coding upstream 35150 66409301 ~ 66411467 (-)
G1198042 NA non-coding upstream 42578 66416729 ~ 66493975 (-)
G1196890 NA other downstream 314989 66052650 ~ 66053067 (-)
G1196805 NA other downstream 482451 65880226 ~ 65920222 (-)
G1196818 NA other downstream 508684 65857818 ~ 65859372 (-)
G1196797 NA other downstream 572621 65790723 ~ 65795435 (-)
G1198140 NA other upstream 419672 66793823 ~ 66852622 (-)
G1198179 NA other upstream 556338 66930489 ~ 66936294 (-)
LOC118938487 LOC106581592 other upstream 638839 66997539 ~ 67015258 (-)
G1198220 NA other upstream 716592 67090743 ~ 67092643 (-)
LOC110512204 LOC106592354 other upstream 797588 67167944 ~ 67175825 (-)

Expression

G1197903(LOC106603827) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
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G1197903(LOC106603827) Expression in each Bioproject

Bar chart with 20 bars.
G1197903(LOC106603827) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network